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UCVM Bioinformatics

University of Calgary Veterinary Medicine

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  1. synergy synergy Public

    Synergy compute cluster info

    Shell 4

  2. markerDB markerDB Public

    Build sequence databases for commonly used marker genes 📜

    R 4 4

  3. vmmp vmmp Public

    Vet Med Microbiome Pipeline

    Python 3 1

  4. nemabiome nemabiome Public

    Nemabiome website

    HTML 1 2

  5. firefly firefly Public

    16S amplicon data processing pipeline

    Python 1

  6. DADA2-ITS2-Analysis DADA2-ITS2-Analysis Public

    R 1 1

Repositories

Showing 10 of 11 repositories
  • nemabiome Public

    Nemabiome website

    ucvm/nemabiome’s past year of commit activity
    HTML 1 2 1 0 Updated May 9, 2024
  • RAD_Haemonchus Public

    Genome-wide sequencing data to identify regions of the genome of the parasitic nematode Haemonchus contortus showing signatures of selection after benzimidazole treatment

    ucvm/RAD_Haemonchus’s past year of commit activity
    R 0 0 0 0 Updated Jul 10, 2022
  • event_detector Public
    ucvm/event_detector’s past year of commit activity
    R 0 0 0 0 Updated Oct 30, 2019
  • markerDB Public

    Build sequence databases for commonly used marker genes 📜

    ucvm/markerDB’s past year of commit activity
    R 4 MIT 4 2 0 Updated Jun 27, 2019
  • nemabiomeR Public

    Helper functions to run the dada2 pipeline on nemabiome data

    ucvm/nemabiomeR’s past year of commit activity
    R 0 0 0 0 Updated Jun 6, 2019
  • firefly Public

    16S amplicon data processing pipeline

    ucvm/firefly’s past year of commit activity
    Python 1 0 0 0 Updated Apr 26, 2019
  • DADA2-ITS2-Analysis Public
    ucvm/DADA2-ITS2-Analysis’s past year of commit activity
    R 1 1 0 0 Updated Nov 30, 2018
  • synergy Public

    Synergy compute cluster info

    ucvm/synergy’s past year of commit activity
    Shell 4 0 0 0 Updated Jan 17, 2018
  • vmmp Public

    Vet Med Microbiome Pipeline

    ucvm/vmmp’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Sep 19, 2017
  • microbiome_resources Public

    Good microbiome resources

    ucvm/microbiome_resources’s past year of commit activity
    0 0 0 0 Updated Feb 2, 2017
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