Fix bug in notebook #21
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - 'v[0-9]*' | |
| tags: | |
| - 'v[0-9]*' | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| strategy: | |
| matrix: | |
| python_version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, windows-latest, macos-14] | |
| exclude: | |
| - os: macos-14 | |
| python_version: "3.9" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Choose Python version ${{ matrix.python_version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '${{ matrix.python_version }}' | |
| cache: 'pip' | |
| - run: | | |
| [[ "${{ matrix.os }}" = "ubuntu-latest" ]] && sudo apt-get install -y libcap-dev || true | |
| shell: bash | |
| - name: install tox (with uv) | |
| run: python3 -m pip install tox tox-uv | |
| - name: run tox | |
| run: tox -e 'py${{ matrix.python_version }}' | |
| - name: submit code coverage | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| node: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Node.js environment | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| cache: 'npm' | |
| cache-dependency-path: client/package-lock.json | |
| - run: (cd client && npm ci) | |
| - run: (cd client && npm run build) | |
| - run: (cd client && CI=1 npm run coverage) | |
| - run: (cd client && npm run lint) | |
| - name: submit code coverage | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| additional: | |
| strategy: | |
| matrix: | |
| envs: ["numba_coverage", "docs-check", "web_api"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 'Choose Python version 3.11' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: 'pip' | |
| - run: sudo apt-get install -y pandoc libcap-dev graphviz | |
| - name: install tox | |
| run: python3 -m pip install tox tox-uv | |
| - name: 'run tox for environment ${{ matrix.envs }}' | |
| run: tox -e '${{ matrix.envs }}' | |
| - name: submit code coverage | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| build-docker-image: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 'Choose Python version 3.11' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: install dependencies | |
| run: python3 -m pip install pip-tools | |
| - name: generate requirements.txt | |
| run: cd packaging/docker && ./update_reqs.sh | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Pull cache base image | |
| run: | | |
| docker pull python:3.11-slim # the base image, to make sure we get the latest one | |
| docker pull ghcr.io/libertem/libertem-dev:latest | |
| - name: Build and push (libertem/libertem-triage) | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: packaging/docker/Dockerfile | |
| context: . | |
| push: ${{ startsWith(github.ref, 'refs/tags/v') || startsWith(github.ref, 'refs/heads/v') || github.ref == 'refs/heads/master' }} | |
| tags: ghcr.io/libertem/libertem-triage:pre-${{ github.sha }} | |
| cache-from: type=registry,ref=ghcr.io/libertem/libertem-dev:latest | |
| cache-to: type=inline | |
| - name: Build and push (libertem/libertem-dev) | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: packaging/docker/Dockerfile | |
| context: . | |
| push: ${{ startsWith(github.ref, 'refs/tags/v') || startsWith(github.ref, 'refs/heads/v') || github.ref == 'refs/heads/master' }} | |
| tags: ghcr.io/libertem/libertem-dev:pre-${{ github.sha }} | |
| cache-from: type=registry,ref=ghcr.io/libertem/libertem-dev:latest | |
| cache-to: type=inline | |
| build-args: | | |
| dev=1 | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 'Choose Python version 3.11' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: 'pip' | |
| - run: sudo apt-get install -y pandoc | |
| - name: install tox | |
| run: python3 -m pip install tox tox-uv | |
| - name: 'run tox for docs-build-ci' | |
| run: tox -e 'docs-build-ci' | |
| - uses: actions/upload-pages-artifact@v3.0.1 | |
| with: | |
| path: 'docs/build/html/' | |
| deploy-docs: | |
| runs-on: ubuntu-latest | |
| needs: [build-docs, additional, tests, node, build-docker-image] | |
| if: github.ref == 'refs/heads/master' | |
| permissions: | |
| pages: write | |
| id-token: write | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| - run: | | |
| curl -XPOST -u "sk1p:${{secrets.PAGES_TRIGGER_GH_TOKEN}}" -H "Accept: application/vnd.github.everest-preview+json" -H 'Content-Type: application/json' https://api.github.com/repos/LiberTEM/libertem.github.io/dispatches --data '{"event_type":"build_pages","client_payload":{"from":"LiberTEM"}}' | |
| release: | |
| runs-on: ubuntu-latest | |
| needs: [build-docs, additional, tests, node, build-docker-image] | |
| # master branch, stable branches or release tags: | |
| if: startsWith(github.ref, 'refs/tags/v') || startsWith(github.ref, 'refs/heads/v') || github.ref == 'refs/heads/master' | |
| env: | |
| LT_RELEASE_UPLOAD_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| LT_RELEASE_UPLOAD_PYPI_TEST_PASSWORD: ${{ secrets.LT_RELEASE_UPLOAD_PYPI_TEST_PASSWORD }} | |
| LT_RELEASE_UPLOAD_PYPI_PASSWORD: ${{ secrets.LT_RELEASE_UPLOAD_PYPI_PASSWORD }} | |
| LT_RELEASE_UPLOAD_ZENODO_SANDBOX_TOKEN: ${{ secrets.LT_RELEASE_UPLOAD_ZENODO_SANDBOX_TOKEN }} | |
| LT_RELEASE_UPLOAD_ZENODO_TOKEN: ${{ secrets.LT_RELEASE_UPLOAD_ZENODO_TOKEN }} | |
| LT_RELEASE_UPLOAD_ZENODO_SANDBOX_PARENT: ${{ secrets.LT_RELEASE_UPLOAD_ZENODO_SANDBOX_PARENT }} | |
| LT_RELEASE_UPLOAD_ZENODO_PARENT: ${{ secrets.LT_RELEASE_UPLOAD_ZENODO_PARENT }} | |
| steps: | |
| - run: sudo apt-get install -y fuse | |
| - uses: actions/checkout@v4 | |
| - name: Choose Python version 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| cache: 'pip' | |
| - name: install release script deps | |
| run: pip install -r scripts/requirements.txt | |
| - name: release status | |
| run: ./scripts/release status | |
| - name: run release script | |
| run: ./scripts/release --verbose upload --no-dry-run --pypi-user __token__ --pypi-test-user __token__ --build-appimage | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Pull docker images from build stage | |
| run: | | |
| docker pull ghcr.io/libertem/libertem-triage:pre-${{ github.sha }} | |
| docker pull ghcr.io/libertem/libertem-dev:pre-${{ github.sha }} | |
| - name: Push images to GHCR | |
| run: | | |
| ./scripts/release docker-retag ghcr.io/libertem/libertem-triage:pre-${{ github.sha }} ghcr.io/libertem/libertem | |
| docker buildx imagetools create --tag ghcr.io/libertem/libertem-dev:latest ghcr.io/libertem/libertem-dev:pre-${{ github.sha }} |