pyriandx

pyriandx is CLI client and Python SDK/Library for PierianDx Clinical Genomics Workspace (CGW) web services -- https://umccr.github.io/pyriandx/

• Test Coverage
• PyDoc
• https://github.com/umccr/pyriandx

TL;DR

• Install through pip like so

  pip install pyriandx
  

• Export PDX_ environment variables

  export PDX_USERNAME=<YOUR_PierianDx_CGW_LOGIN_EMAIL>
  export PDX_PASSWORD=<YOUR_PierianDx_CGW_LOGIN_PASSWORD>
  export PDX_INSTITUTION=<ASK_YOUR_PierianDx_CGW_ACCOUNT_MANAGER>
  export PDX_BASE_URL=https://app.pieriandx.com/cgw-api/v2.0.0
  

• Print CLI command help

  pyriandx version
  pyriandx help
  pyriandx case help
  pyriandx list help
  pyriandx create help
  pyriandx upload help
  pyriandx run help
  pyriandx job help
  pyriandx poll help
  pyriandx report help
  

• More examples/tutorials available at User Guide

License

MIT License and DISCLAIMER