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Python package to aid materials design

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SMACT

Semiconducting Materials from Analogy and Chemical Theory (SMACT) is a collection of rapid screening tools that uses data about chemical elements.

If you torture the data enough, nature will always confess - Roland Coase (from 'How should economists choose?')

Statement of need

The purpose of SMACT is to facilitate the high-throughput screening and design of functional materials. It follows a top-down approach where a set of element combinations is generated and then screened using rapid chemical filters. It can be used as part of a multi-technique workflow or to feed machine learning models for materials.

Contents

  • smact library containing:
    • __init__.py Contains the core Element and Species classes.
    • data_loader.py Handles the loading of external data used to initialise the core smact.Element and smact.Species classes.
    • screening.py Used for generating and applying filters to compositional search spaces.
    • properties.py A collection of tools for estimating useful properties based on composition.
    • lattice.py Given the sites, multiplicities and possible oxidation states at those sites, this reads from the database and generates all possible stoichiometeries.
    • builder.py Builds some common lattice structures, given the chemical composition.
    • lattice_parameters.py Estimation of lattice parameters for various lattice types using covalent/ionic radii.
    • distorter.py A collection of functions for enumerating and then substituting on inequivalent sites of a sub-lattice.

Requirements

The main language is Python 3 and basic requirements are Numpy and Scipy. The Atomic Simulation Environment (ASE), spglib, and pymatgen �are also required for many components.

Installation

pip install git+git://github.com/WMD-group/SMACT.git

On a unix-like system, simply add the directory containing this README file to your PYTHONPATH. e.g. in ~/.bashrc

export PYTHONPATH="/home/username/src/smact:$PYTHONPATH"

Usage

SMACT's features are accessed through Python scripts, importing classes and functions as needed. Some applications are available in our examples folder, as well as in the SMACT workflow respository.

License and attribution

Python code and original data tables are licensed under the GNU General Public License (GPL) v3.

The following files have their own licenses: data/elements.txt is from the OpenBabel project and licensed under the GPL v2, which is included in the parent folder.

Development notes

Bugs, features and questions

Please use the Issue Tracker to report bugs or request features. While we hope that most questions can be answered by searching the docs, we welcome new questions on the issue tracker, especially if they helps us improve the docs!

Code contributions

We are always looking for ways to make SMACT better and more useful to the wider community; contributions are very welcome. Please use the "Fork and Pull" workflow to make contributions and stick as closely as possible to the following:

  • Code style should comply with PEP8 where possible. Google's house style is also helpful, including a good model for docstrings.
  • Please use comments liberally when adding nontrivial features, and take the chance to clean up other people's code while looking at it.
  • Add tests wherever possible, and use the test suite to check if you broke anything. Testing modules should be pass/fail and wrapped into tests/test.py. Run the tests using python -m smact.tests.test -v. (The final -v is optional and adds more detail to the output.)

References

D. W. Davies et al, "Materials discovery by chemical analogy: role of oxidation states in structure prediction" Faraday Discuss. 211, 553 (2018)

D. W. Davies et al, "Computer-aided design of metal chalcohalide semiconductors: from chemical composition to crystal structure" Chem. Sci. 9, 1022 (2018)

D. W. Davies et al, "Computational screening of all stoichiometric inorganic materials" Chem 1, 617 (2016)

B. R. Pamplin, "A systematic method of deriving new semiconducting compounds by structural analogy", J. Phys. Chem. Solids 25, 675 (1964)

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Python package to aid materials design

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