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WIP: SRA in tmpdir #963

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@simonvh simonvh commented Mar 20, 2023

What problem is the PR solving / What's new?

See #961

What did change

SRA files are downloaded to a temporary directory in $TMPDIR and FASTQ files are initially dumped to $TMPDIR. This has the effect of reducing the potential IO load on a shared (NFS) file system.

Checklist

  • I made a PR to develop (not master)
  • If applicable: I updated the docs
  • I updated the CHANGELOG
  • These changes are covered by the tests

@simonvh simonvh changed the base branch from master to develop March 20, 2023 11:56
@simonvh simonvh closed this Oct 17, 2023
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