Clone this repo first and after that, enter the project root directory.
This project uses Maven as a build management tool, so first make sure your machine has Maven installed.
Run mvn clean install to build the program with its dependencies.
After a successful build you should find a
newly created directory /target containing a .jar file color-balance-calculator-1.0-SNAPSHOT.jar.
The execution command is java -jar color-balance-calculator-1.0-SNAPSHOT.jar -i [PATH_TO_YOUR_FILE] with a file path
of your choice (absolute or relative; platform-independent).
You can use any of the input formats provided in the example input files. The default delimiter is
space, but you can provide your own (comma or semicolon) by using -d flag when executing the program. Just make sure it's
consistent throughout your file.
Also, please make sure to place only one index per line. If you like, you can add a number at the beginning
of the line for better overview, but this is completely optional.
In case you don't have an input file ready, you can find three sample inputs.
- NGS sequencing -> Illumina sequencing
- 2- and 4-channel SBS
https://www.pnas.org/doi/10.1073/pnas.0609513103
https://www.ecseq.com/support/ngs/do-you-have-two-colors-or-four-colors-in-Illumina