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Vierstra Lab

Popular repositories Loading

  1. motif-clustering motif-clustering Public

    Clustering motif models to remove redundancy

    PostScript 37 8

  2. genome-tools genome-tools Public

    Processing and plotting tools for genomics data

    Python 20 2

  3. footprint-tools footprint-tools Public

    A toolset to analyze genomic footprinting data

    C 19 3

  4. nf-footprinting nf-footprinting Public

    Nextflow 1

  5. nf-genotyping nf-genotyping Public

    Nextflow pipeline for genotyping from chromatin accessibility data

    Python 1

  6. nf-index nf-index Public

    Nextflow pipeline to construct a chromatin accessibility peak index

    Nextflow 1

Repositories

Showing 10 of 21 repositories
  • hotspot3 Public

    Reimplementation of hotspot2 in python3

    vierstralab/hotspot3’s past year of commit activity
    Python 0 0 0 0 Updated Nov 6, 2024
  • long-read-RNAseq Public

    PIPELINE for identifying and quantifying known and novel genes/isoforms in long-read RNA-seq data

    vierstralab/long-read-RNAseq’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 1, 2024
  • genome-tools Public

    Processing and plotting tools for genomics data

    vierstralab/genome-tools’s past year of commit activity
    Python 20 GPL-3.0 2 1 0 Updated Oct 17, 2024
  • nf-genotyping Public

    Nextflow pipeline for genotyping from chromatin accessibility data

    vierstralab/nf-genotyping’s past year of commit activity
    Python 0 GPL-3.0 1 0 1 Updated Sep 5, 2024
  • nf-allelic-mapping Public
    vierstralab/nf-allelic-mapping’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 21, 2024
  • vierstralab_scATACking Public

    In this repository you can find python scrips for scATAC-seq data analysis with excamples of data and graphs.

    vierstralab/vierstralab_scATACking’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 23, 2024
  • footprint-tools Public

    A toolset to analyze genomic footprinting data

    vierstralab/footprint-tools’s past year of commit activity
    C 19 GPL-3.0 3 3 0 Updated Jun 18, 2024
  • nf-deseq Public

    For running pydeseq on DNase data.

    vierstralab/nf-deseq’s past year of commit activity
    Shell 0 0 0 0 Updated May 20, 2024
  • DHS-evolution Public
    vierstralab/DHS-evolution’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 15, 2024
  • nf-footprinting Public
    vierstralab/nf-footprinting’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Apr 29, 2024
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