genice2 4R -f svg[shadow:rotatex=2:rotatey=88] > 4R.svg

genice2-svg

A GenIce2 plugin to illustrate the structure in SVG (and PNG) format.

version 2.4.1

Requirements

• python^3.9
• numpy^1.26.4
• genice2>=2.2
• svgwrite>=1.4.3
• pillow*

Installation from PyPI

% pip install genice2-svg

Manual Installation

System-wide installation

% make install

Private installation

Copy the files in /formats/ into your local formats/ folder.

Usage

Usage:
    % genice2 CS2 -r 3 3 3 -f svg[rotatex=30:shadow] > CS2.svg

Options:
    rotatex=30
    rotatey=30
    rotatez=30
    polygon        Draw polygons instead of a ball and stick model.
    arrows         Draw the hydrogen bonds with arrows.
    shadow=#8881   Draw shadows behind balls.
    bg=#f00        Specify the background color.
    O=0.06
    H=0            Size of the hydrogen atom (relative to that of oxygen)
    HB=0.4         Radius of HB relative to that of oxygem
    OH=0.5         Radius of OH colvalent bond relative to that of oxygem
    width=0        (Pixel)
    height=0       (Pixel)
    margin=0       (Pixel)

Png is a quick alternative for svg. Use png if making svg is too slow.

Usage:
    % genice2 CS2 -r 3 3 3 -f png[shadow:bg=#f00] > CS2.png

Options:
    rotatex=30
    rotatey=30
    rotatez=30
    shadow         Draw shadows behind balls.
    bg=#f00        Specify the background color.
    H=0            Size of the hydrogen atom (relative to that of oxygen)
    O=0.06         Size of the oxygen atom in nm.
    HB=0.4         Radius of HB relative to that of oxygen
    OH=0.5         Radius of OH colvalent bond relative to that of oxygen
    width=0        (Pixel)
    height=0       (Pixel)

Test in place

% make test