Skip to content
@vivaxgen

The vivaxGEN Project

README.rst

vivaxGEN

The vivaxGEN github repository provides the necessary tools to perform analysis on molecular surveillance data supporting the elimination of Plasmodium vivax.

Pinned Loading

  1. ngs-pipeline ngs-pipeline Public

    vivaxGEN NGS pipeline for whole genome and targeted sequencing

    Python 2

  2. MicroHaps MicroHaps Public

    vivaxGEN Microhaps caller pipeline - future docs would be at: https://vivaxgen-microhaps.readthedocs.io/en/latest/

    Python

  3. G6PD_MinION G6PD_MinION Public

    Pipeline for G6PD genotyping using ONT-based amplicon assay

    Python

  4. sra-repo sra-repo Public

    SRA repository management system

    Python

Repositories

Showing 10 of 23 repositories
  • MicroHaps Public

    vivaxGEN Microhaps caller pipeline - future docs would be at: https://vivaxgen-microhaps.readthedocs.io/en/latest/

    vivaxgen/MicroHaps’s past year of commit activity
    Python 0 0 0 0 Updated Nov 5, 2024
  • G6PD_MinION Public

    Pipeline for G6PD genotyping using ONT-based amplicon assay

    vivaxgen/G6PD_MinION’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2024
  • ngs-pipeline Public

    vivaxGEN NGS pipeline for whole genome and targeted sequencing

    vivaxgen/ngs-pipeline’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 22, 2024
  • vgnpc-plasmodium-spp Public

    vivaxGEN NGS-Pipeline configuration settings for Plasmodium spp

    vivaxgen/vgnpc-plasmodium-spp’s past year of commit activity
    Shell 0 Unlicense 0 0 0 Updated Oct 18, 2024
  • stable-tag-tester Public

    tester

    vivaxgen/stable-tag-tester’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 12, 2024
  • mea-pipeline Public

    Molecular Epidemiology Analytics (MEA) Pipeline

    vivaxgen/mea-pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 2, 2024
  • microhaps_mito Public
    vivaxgen/microhaps_mito’s past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2024
  • vvg-base Public

    vivaxGEN base installation utility

    vivaxgen/vvg-base’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 12, 2024
  • warpedLMM-py3 Public Forked from PMBio/warpedLMM

    warpedLMM updated to Python 3.x

    vivaxgen/warpedLMM-py3’s past year of commit activity
    Python 0 8 0 0 Updated Jun 26, 2024
  • muhapsfinder Public

    A pipeline to generate microhaplotypes from VCF data

    vivaxgen/muhapsfinder’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 26, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…