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Add parametric UMAP model family #688

Merged
merged 184 commits into from
Aug 14, 2023
Merged

Add parametric UMAP model family #688

merged 184 commits into from
Aug 14, 2023

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NickleDave
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@NickleDave NickleDave commented Aug 14, 2023

This fixes #631. It's not actually complete but I need to clean up the codebase and fix unit tests so @marisbasha has a good base to work from for #674. I also need to get in a fix for #687. I will make a new issue that lists remaining tasks for adding Parametric UMAP and come back to that after cleaning up.

edit: issue to finish up is #689

…tion_dataframe', and add function 'vak.prep.split.unit_dataframe'
…classification.prep_frame_classification_dataset
…dataset` to use `dataset_arrays.move_array_files_into_split_dirs` and `Metadata`
…er default to None, fix parameter order in docstring
…ests/configs/ConvEncoderUMAP_eval_audio_cbin_annot_notmat.toml
… make it return the shape of all spectrograms
…c_umap/parametric_umap.py and use with Metadata
…py, to use in train.parametric_umap, eval.parametric_umap, etc.
… transform if 'padding' is in the transform_kwargs
… in the right place, before we get the transforms with it
…oder UMAP, remove spect_scaler_path since it's not used
….py, rename ParametricUMAPDataset -> ParametricUMAPTrainingDatset, and add ParametricUMAPInferenceDataset
@NickleDave NickleDave merged commit a9f9d16 into main Aug 14, 2023
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@NickleDave NickleDave deleted the add-parametric-UMAP-model branch August 14, 2023 01:30
NickleDave added a commit that referenced this pull request Aug 15, 2023
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ENH: Add UMAP models and datasets
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