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SPLICE-q is a fast and user-friendly tool, implemented in Python 3, for quantification of individual intron splicing efficiencies from strand-specific RNA-seq data.
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SPLICE-q is freely available under a GNU Public License (Version 2).
V. R. Melo Costa, J. Pfeuffer, A. Louloupi, U. A. V Ørom, and R. M. Piro, “SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency,” bioRxiv, p. 2020.10.12.318808, Oct. 2020.
We currently work on SPLICE-q to improve its usability and we would be happy to get your feedback. If you run into any problems, please do not hesitate to contact us, we would be glad to help. If you think you have found a bug feel free to open an issue in github or make a pull request!