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vvelasqz/README.md

Welcome to my GitHub ๐Ÿ‘‹

I am a computational biologist interested in statistical modeling, systems biology and high throughput data analysis.

Currently I am a Bioinformatics scientist at Greenligh Biosciences.

If you want to know more about me please visit my personal website

๐ŸŽ“ Education:

  • PhD in Bioinformatics and Computational Biology. Iowa State University, USA
  • MS is in Biomedical Research. University of Valladolid, Spain
  • BS Biology. University of Antioquia, Colombia
  • BS Biological Engineering. National University of Colombia

๐Ÿ““ Some of my projects

  • Y2H-SCORES is a software to analyze high throughput Y2H data and proiritize protein-protein interactions. Here you can find the repository and the publication

  • I extended Y2H-SCORES to work with mass spectomertry Co-IP data, as you can see here

  • In systems biology I developed Barley_Interactome an integration framework to study barley immunity by integrating interactome, RNASeq, eQTL and Y2H-NGIS data. This work has been submitted for publication

  • I am currently developing different workflows for transcriptome analysis. TranscriptoNET includes differential expression analysis, visualization, Gene Regulatory Networks and epistasis models.

  • I have collaborated in different projects exploring the genomics and population structure of different groups of organisms. These had different applications going from genome evolution to the assessment of genetic diversity linked with agronomic or clinical traits.

If you want more details you can find my CV here

โšก Interests

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  1. Y2H-SCORES Y2H-SCORES Public

    Forked from Wiselab2/Y2H-SCORES

    R

  2. Barley_Interactome Barley_Interactome Public

    R 1

  3. Fusarium_Genotyping Fusarium_Genotyping Public

    Code used for analyses in the publication Assessment of genotyping markers in the molecular characterization of a population of clinical isolates of Fusarium in Colombia

    R

  4. TranscriptoNET TranscriptoNET Public

    R