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Merge pull request #33 from wikipathways/json_api
Json api
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,78 @@ | ||
| # ------------------------------------------------------------------------------ | ||
| #' @title Find Pathways By ORCID | ||
| #' | ||
| #' @description Retrieve pathways containing the query ORCID | ||
| #' @param query The \code{character} ORCID to search for. | ||
| #' @return A \code{dataframe} of pathway attributes including the matching | ||
| #' ORCIDs | ||
| #' @examples { | ||
| #' findPathwaysByOrcid(' 0000-0001-9773-4008') | ||
| #' } | ||
| #' @export | ||
| #' @importFrom purrr map_dfr | ||
| #' @import dplyr | ||
| findPathwaysByOrcid <- function(query=NULL) { | ||
| if(is.null(query)) | ||
| stop("Must provide an ORCID, e.g., 0000-0001-9773-4008") | ||
|
|
||
| res <- rjson::fromJSON(file="https://www.wikipathways.org/json/findPathwaysByOrcid.json") | ||
| res.df <- res$pathwayInfo %>% | ||
| purrr::map_dfr(~as.data.frame(t(unlist(.x)))) | ||
|
|
||
| res.df <- res.df %>% | ||
| rowwise() %>% | ||
| dplyr::filter(grepl(tolower(query),tolower(orcids))) | ||
|
|
||
| if(nrow(res.df) == 0) | ||
| message("No results") | ||
|
|
||
| return(as.data.frame(res.df)) | ||
| } | ||
|
|
||
| # ------------------------------------------------------------------------------ | ||
| #' @title Find Pathway WPIDs By ORCID | ||
| #' | ||
| #' @description Retrieve list of pathway WPIDs containing the query ORCID | ||
| #' @param query The \code{character} ORCID to search for. | ||
| #' @return A \code{list} of WPIDs | ||
| #' @examples { | ||
| #' findPathwayIDsByOrcid(' 0000-0001-9773-4008') | ||
| #' } | ||
| #' @seealso findPathwaysByOrcid | ||
| #' @export | ||
| findPathwayIDsByOrcid <- function(query=NULL) { | ||
| res <- findPathwaysByOrcid(query) | ||
| return(res$id) | ||
| } | ||
|
|
||
| # ------------------------------------------------------------------------------ | ||
| #' @title Find Pathway Names By ORCID | ||
| #' | ||
| #' @description Retrieve list of pathway names containing the query ORCID | ||
| #' @param query The \code{character} ORCID to search for. | ||
| #' @return A \code{list} of lists | ||
| #' @examples { | ||
| #' findPathwayNamesByOrcid(' 0000-0001-9773-4008') | ||
| #' } | ||
| #' @seealso findPathwaysByOrcid | ||
| #' @export | ||
| findPathwayNamesByOrcid <- function(query=NULL) { | ||
| res <- findPathwaysByOrcid(query) | ||
| return(res$name) | ||
| } | ||
|
|
||
| # ------------------------------------------------------------------------------ | ||
| #' @title Find Pathway URLs By ORCID | ||
| #' | ||
| #' @description Retrieve list of pathway URLs containing the query ORCID | ||
| #' @param query The \code{character} ORCID to search for. | ||
| #' @return A \code{list} of lists | ||
| #' @examples { | ||
| #' findPathwayUrlsByOrcid(' 0000-0001-9773-4008') | ||
| #' } | ||
| #' @seealso findPathwaysByOrcid | ||
| #' @export | ||
| findPathwayUrlsByOrcid <- function(query=NULL) { | ||
| res <- findPathwaysByOrcid(query) | ||
| return(res$url) | ||
| } |
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