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Pinned repositories

  1. abeona

    abeona -- Abeona is the goddess of outward graph traversal

    Python 2 1

  2. cortexpy

    A Python API for manipulating (Mc)Cortex de novo assembly graph and link data


  3. GLPhase

    A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples

    C++ 5 1

  4. DM

    DistributedMake - a perl library for pipelining with GNU make

    Perl 1 1

  5. subsetREFERENCE

    This is a simple tool for subsetting sites from a WTCCC style haplotypes file.


648 contributions in the last year

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Contribution activity

October 2018

Created a pull request in nextflow-io/nextflow that received 1 comment

Fix up grammar in -resume warning on new project

Changed present tense to present perfect. Replaced "seems" with "appears" because "appears" seems more appropriate in this context. To this develo…

+1 −1 1 comment

Created an issue in mcveanlab/mccortex that received 4 comments

Link creation fails on minimal example?

I have created a gist with the relevant input and log files. When I run mccortex with kmer size 3 with an input fasta containing two reads of lengt…


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