isa2mzML empty collection for study MTBLS719

[yguitton]

Hi @pkrog ,

maybe not an isa2mzML issue, but just in case.

As you know I'm trying to reproduce MTBLS719 study in W4M. I'm able to get the isa-tab and that all.
Now, I am trying d to get the mzML files with isa2mzML tool, but I get an empty dataset....Maybe it's linked to "incorrect" files in the Metabolights repository or to the structure of that repo.
In fact, mzML files are in a DERIVED_FILES sub-folder see picture

I'm only interested by the a_MTBLS719_LC-MS_positive_reverse-phase_metabolite_profiling.txt related files, is there an option to download only these files?

Many thanks fro your time