Consolidate most of the code about the run folder in npg_tracking::illumina::run::folder role #812
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Removed largely outdated npg_tracking::illumina::run::folder::location role. Moved a few updated relevant expressions to npg_tracking::illumina::run::folder role. Simplified the code that infers the run folder path. Excluded provisions for tests from the producton code. Brought 'npg_tracking' configuration test file up-to-date and set the updated unit tests for the npg_tracking::illumina::run::folder role to retrieve the value of the test staging area prefix from this configuration file.
Made npg_tracking::illumina::run::folder role inherit from npg_tracking::illumina::run::short_info role since these two roles are never used separately.
... from npg_tracking::illumina::runfolder to npg_tracking::illumina::run::folder.
Merged the remaining code from npg_tracking::illumina::run::short_info role into the npg_tracking::illumina::run::folder role.
The Config directory does not exist in NovaSeqX run folders.
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This part contained the code that failed the compilation following the deletion of teh short_info role in wtsi-npg/npg_tracking#812
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They were testing the ability to infer different paths, which is already tested in npg_tracking GitHub repo. The deleted tests were for some unlikely or old scenarios. Some of the deleted tests started to fail following the reorganisation and simplification of the npg_tracking::illumina::runfolder class and its dependencies in wtsi-npg/npg_tracking#812
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This is a huge simplification of the code we have in the npg_tracking::illumina namespace. We will be left with
lib/npg_tracking/illumina/runfolder.pm
lib/npg_tracking/illumina/run/long_info.pm
lib/npg_tracking/illumina/run/folder.pm
lib/npg_tracking/illumina/run.pm
instead of
lib/npg_tracking/illumina/runfolder.pm
lib/npg_tracking/illumina/run/short_info.pm
lib/npg_tracking/illumina/run/folder/location.pm
lib/npg_tracking/illumina/run/long_info.pm
lib/npg_tracking/illumina/run/folder.pm
lib/npg_tracking/illumina/run.pm