Skip to content

Issues: xingjianleng/DBGA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

13 Open 13 Closed
13 Open 13 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

competing algorithm
#27 opened Apr 3, 2023 by GavinHuttley
CRASSPhage data set
#26 opened Dec 7, 2022 by GavinHuttley
@Vini2
2
provide an interface for parameter controls help wanted Extra attention is needed
#25 opened Dec 7, 2022 by GavinHuttley
find multiple sequence alignment benchmarking data sets help wanted Extra attention is needed
#24 opened Dec 7, 2022 by GavinHuttley
implement a progressive alignment integration algorithm help wanted Extra attention is needed
#23 opened Dec 7, 2022 by GavinHuttley
1
evaluating alignment quality
#22 opened Dec 1, 2022 by GavinHuttley
@GavinHuttley
2
where is the guide tree estimated?
#21 opened Dec 1, 2022 by GavinHuttley
@GavinHuttley
1
extending dbga to use a different substitution model
#20 opened Dec 1, 2022 by GavinHuttley
@GavinHuttley @xingjianleng
5
identify lines where modifications for bubble mismatch can be identified
#19 opened Dec 1, 2022 by GavinHuttley
@GavinHuttley
1
refactor kmer code to use cogent3 routines
#18 opened Nov 17, 2022 by GavinHuttley
refactor major classes to reduce complexity
#17 opened Nov 17, 2022 by GavinHuttley
move datasampler module
#16 opened Nov 17, 2022 by GavinHuttley
How to filter invalid merge_node_indices for multi-sequence de Bruijn alignment?
#15 opened Aug 13, 2022 by xingjianleng
@GavinHuttley @biolinyu @xingjianleng
ProTip! What’s not been updated in a month: updated:<2024-10-11.