v2.0

This release breaks the backward compatibility of pipeline. **Use version before v1.3, for more consistent result as the protocol. **

• default mapping and filtering args are changed
• the whole pipeline has been reformed

v1.6

• validate YAML file
• report read stats into webpage
• update trim args
• ...

v1.5

• simplify input reference requirement.

v1.4

(Adjust STAR mapping parameters.)

• All best only, no 2nd best
• outFilterScoreMinOverLread 0.66 -> 0.8

⚠ This update will change (improved) the output of the pipeline; thus, the result won't be 100% identical to the protocol. This difference is very small. If you are concerned about this, use version before 1.4 to have 100% identical results.

v1.3

• unify all path. Now all relative to data.yaml file by default.

NOTE: release v1 in docker hub is locked at this version.

v1.2

• skip contamination removal if it is not provided

v1.1

• customized tmp dir
• pass all args into workflow
• entrypoint for docker
• ...

v1.0

Release version v1.0