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1. ANTs ANTs Public

   Forked from ANTsX/ANTs

   Advanced Normalization Tools (ANTs)

   C++

2. CaImAn CaImAn Public

   Forked from flatironinstitute/CaImAn

   Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

   Python

3. nerds nerds Public

   Forked from KordingLab/nerds

   👼 Matlab package implementing blind deconvolution method for neural spike recovery

   Jupyter Notebook

4. ZebrafishBrainRegistration_Zbrain_ANTs ZebrafishBrainRegistration_Zbrain_ANTs Public

   Forked from nvladimus/ZebrafishBrainRegistration_Zbrain_ANTs

   Non-rigid registration of zebrafish brains to the Z-Brain Atlas using ANTs

   Jupyter Notebook

5. ffn ffn Public

   Forked from google/ffn

   Flood-Filling Networks for instance segmentation in 3d volumes.

   Python

6. ZebrafishBrainBrowser ZebrafishBrainBrowser Public

   Forked from BurgessLab/ZebrafishBrainBrowser

   Tool for visualizing 3D expression data in zebrafish

   JavaScript