Problem for SpiecEasi installation #13
Comments
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That seems like a devtools issue to me... have you tried using
install_github with another package? Have you tried passing in a directory
for the repo install directly?
In general, it seems like bad practice to have spaces in directory paths,
even for Windows, so you might want to change your computer name. Let me
know how it goes.
…On Feb 20, 2017 6:30 AM, "julcham1" ***@***.***> wrote:
Hello,
I would like to report an issue during the installation of SpiecEasi.
There is a space in the username of my computer. I never had previous issue
for installing any package in RStudio before.
Does anyone know what happen ?
Thanks,
Julien
install_github("zdk123/SpiecEasi")
Downloading GitHub repo ***@***.***
from URL https://api.github.com/repos/zdk123/SpiecEasi/zipball/master
Installing SpiecEasi
Installing 2 packages: digest, Rcpp
Installing packages into ‘C:/Users/Jul & Cath/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/digest_0.6.12.zip'
Content type 'application/zip' length 172429 bytes (168 KB)
downloaded 168 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/Rcpp_0.12.9.zip'
Content type 'application/zip' length 3192849 bytes (3.0 MB)
downloaded 3.0 MB
package ‘digest’ successfully unpacked and MD5 sums checked
Warning: cannot remove prior installation of package ‘digest’
package ‘Rcpp’ successfully unpacked and MD5 sums checked
Warning: cannot remove prior installation of package ‘Rcpp’
The downloaded binary packages are in
C:\Users\Jul & Cath\AppData\Local\Temp\RtmpAxmm9V\downloaded_packages
"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL "C:/Users/Jul & \
Cath/AppData/Local/Temp/RtmpAxmm9V/devtools6dec755524b/zdk123-SpiecEasi-d705428" --library="C:/Users/Jul & \
Cath/Documents/R/win-library/3.2" --install-tests
Warning: package incorrect 'C:/Users/Jul'
Erreur : ERREUR : aucun package spécifié
'Cath' n'est pas reconnu en tant que commande interne
ou externe, un programme ex‚cutable ou un fichier de commandes.
'Cath' n'est pas reconnu en tant que commande interne
ou externe, un programme ex‚cutable ou un fichier de commandes.
Error: Command failed (1)
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Hello zdk123,
Do you have any ideas on hot wo fix this? Thank you! |
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@galud27 what command led to this error and what are your system specs? Based on the error, it seems that you are missing the stringi package |
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The install_github command. My R version is 3.3.2. I updated it and it stopped working. I did not install that package before, but I just did it and it works! Thank you 👍 |
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I am trying to install SpiecEasi, but apparently SpiecEasi is not available for my R version (5.3.1). |
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@jud25 did you follow the installation instructions: https://github.com/zdk123/SpiecEasi#installation-1? |
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Yes, I have followed the instructions but I have problem with Rcpp package which always fail to install (I have tried many times)... |
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can you post more information about your OS and R session? I can't do much to support an RCpp installation since this is platform dependent. But perhaps you are missing a C++ compiler? https://teuder.github.io/rcpp4everyone_en/020_install.html Rcpp is not [currently] imported by the master branch of SpiecEasi (i.e. version 1) so I'm not even sure what other package is triggering the dependency. |
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MacOS High Sierra, R version 3.5.1 (2018-07-02) and when trying to install through Cran repository, I get the following message "package 'SpiecEasi' is not available (for R version 3.5.1)" |
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The package is not available on CRAN, but you can install directly from github via the devtools package - please look again at instructions (posted above) in the README. |
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Hello, I work on a Mac with macOS Catalina ver10.15.7 and Rstudio 1.1.442 and R version 4.0.3. I have installed the following packages before attempting to install SpiecEasi: Downloading GitHub repo zdk123/SpiecEasi@HEAD 1: All In every attempt for installing SpiecEasi, I chose option 1: All. And for the question about the source (binary or compilation) one time I said "Yes" and another time I said "No". And both times I got errors as follows. Could you please let me know what the issue is? What else I should do to fix this?
1: All Enter one or more numbers, or an empty line to skip updates:1 There is a binary version available but the source version is later: Do you want to install from sources the package which needs compilation? (Yes/no/cancel) no
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Hello,
I would like to report an issue during the installation of SpiecEasi. There is a space in the username of my computer, and it seems to disturb the installation, but I never had previous issue for installing any packages in RStudio before.
Does anyone know what happen ?
Thanks,
Julien
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