This repository contains all the data analysis workflow of Zinc finger proteins (ZFPs) in my published and to-be-published work, including CTCF, ZIM3, ZFP3, ZNF343, ZNF140, ZNF675, etc. The analysis protocols are organized into subdirectories by the name of corresponding ZFP. Some work has been published in varous journals, i.e,
Zheng Zuo and others. Nucleic Acids Research (2023)
Zuo, Z. Mobile DNA 14, 6 (2023)
Zuo, Z. NAR genomics and bioinformatics (2023)
Please contact me if you have any question.
For most studied ZFPs, TFCookbook package is used for specificity modelling and can be installed via:
remotes::install_github("zeropin/TFCookbook")Zheng Zuo
