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Jan 25, 2019
20190123
Oct 10, 2018
Pre-release

@zhanxw zhanxw released this Oct 10, 2017 · 139 commits to master since this release

2017-10-09 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Support BGEN format (see example/experimental/cmd.sh)
    * Add bgen2vcf, bgenFileInfo utitlies
    * Add timeout when checking new version
    * Improve speed of covariance calculation
    * Update combineKinship.py
    * Support KGGSeq inputs

2017-08-18 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Improve speed of covariance calculations
    * Clean codes

2017-07-13 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Fix beta estimation in binary score tests for unrelated individuals
Assets 3
Pre-release

@zhanxw zhanxw released this Jun 14, 2017 · 228 commits to master since this release

2017-06-13 Xiaowei Zhan zhanxw@bunny.swmed.edu

    * Fix a bug related Wald test outputs (fix #30)
    * Fix zero af in famscore (fix #34)

2017-06-09 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Add "--outputID" to output VCF ID to association results (fix #14, #24)
    * Improve error messages when loading decomposed kinship file (fix #29)
    * Add "RVTESTS successfully exit" to stdout (fix #31)
    * Add FASTLMM_DEBUG environment variable to ease debugging (refer to #32)
    * Fix strtol related warning (possibly) (refer to #33)
    * Clean codes

2017-04-27 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Add boltCov model
Assets 3
Pre-release

@zhanxw zhanxw released this Apr 18, 2017 · 266 commits to master since this release

2017-04-14 Xiaowei Zhan zhanxw@bunny.swmed.edu

    * Fix a critical bug related to AF calculation (issue 15)
    * Fix siteFile flag and provide prompt when it's used

2017-04-12 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Support comma as a separator in parameter options

2017-03-07 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Fix SE calculation in '--single score' (continuous/binary traits)
    * Add --numThreads option (may increase speed)
    * Improve BoltLMM model
    * Add more test cases
    * Fix .dim file outputs from vcf2kinship
Assets 3
Pre-release

@zhanxw zhanxw released this Mar 1, 2017 · 316 commits to master since this release

2017-02-28 Xiaowei Zhan zhanxw@fantasia.csgstat.sph.umich.edu

    * Fix a bug when loadindg a group of varaints
    * Fix SE calculation in '--single score' for quantitative traits
    * Fix BoltLMM implementation
    * Improve SkatO robustness
    * Revise documentation
Assets 3
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