Skip to content
/ island Public

Revealing neural correlates of behavior without behavioral measurements

Notifications You must be signed in to change notification settings

zivlab/island

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

7 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Revealing neural correlates of behavior without behavioral measurements

This repository includes several scripts and data sets which allow performing analysis presented in Rubin et al., 2019.

Usage and documentation

Scripts are provided in the Scripts directory. This folder should be added in the MATLAB Set Path. An example hippocampal data set is provided in the SampleData directory. To perform the analysis on the example hippocampal data set, use the InternalStructureHippocamopus.m script. To perform the analysis on the example head-direction data set, use the InternalStructureHeadDirection.m script. The scripts and functions to produce processed data from raw data as given in CRCNS by Peyrache & Buzsáki (2015) are provided in the RawToProcessed directory.

Simulated examples illustrating the principles of our work are provided in the SimulatedExamples directory. For clustering of simulated data -first use CreateDataSetClusting.m to create a data set, and then use TopoClusteringScriptExample.m to analyse (cluster) it.

References

  • Alon Rubin, Liron Sheintuch, Noa Brande-Eilat, Or Pinchasof, Yoav Rechavi, Nitzan Geva & Yaniv Ziv. (2019). Revealing neural correlates of behavior without behavioral measurements. Nature Communications volume 10, Article number: 4745 https://doi.org/10.1038/s41467-019-12724-2
  • Adrien Peyrache, Marie M Lacroix, Peter C Petersen & György Buzsáki. (2015). Internally organized mechanisms of the head direction sense. Nature Neuroscience volume 18, 569–575.
  • Adrien Peyrache & György Buzsáki. (2015). Extracellular recordings from multi-site silicon probes in the anterior thalamus and subicular formation of freely moving mice. CRCNS https://crcns.org/data-sets/thalamus.

About

Revealing neural correlates of behavior without behavioral measurements

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published