This repository serve to make graphs from .fasq file.

The png_maker.py is the main program that takes in a fastq file. It then calculate the average, max, mininum, and median of the fred score for each sequence. Using the calculated data, they program output a scatter plot, a histogram, and a violent plot.

The x-axis of scatter plot is average fred score, y is maximum fred score. The histogram uses the average fred score as the main data. The violet plot uses average fred score as the data. (still under development)