update #26
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update #26
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* Fix variant decoy crash, refactor try_catch * Add checks on unit test, fix bugs * Smash the Beetles * comment updates
* Speed up peptide deserialization * Remove debug code * Update unit test method, revert deletion of throw * codacy
* .NET Core 3.0 implementation of mzLib * small fixes * edit csproj and assemblyinfo * fix mistake in nuspec file * align paths in .csproj to appveyor expected paths * update uniprot list count * update unimod test again... * update nuspec file with dependencies * merge conflicts * delete TestVariantProtein file * update ptm list unit test
- unit tests - added new variable to Protein object for protein pep
* Speed up peptide deserialization * Remove debug code * Update unit test method, revert deletion of throw * codacy * Deconvolution First Pass * Major deconvolution changes * Remove test code * Remove unnecessary references * Comments, remove debug code * A few more comments * rename variable * Incorporate Shortreed unit test
* Fix ETD bug * ETD fragmentation bug * add comment * 1842
* initial commit * stash changes * more noise estimation stuff * stash changes * protein intensity stuff * fix small bug * add some more stuff * commit stuff * better bias estimation, better fdr estimation * fix a couple bugs * fix a crash * maybe final commit of this version update * null hypothesis change * fix bug * add lower limit to null hypothesis width * remove big debugging unit tests * update unit tests for MBR, bayesian quant * Update TestFlashLFQ.csproj * new unit test for intensity-dependent uncertainty estimation in protein quant * comment out most of paired protein quant file for code coverage reasons * add peptide labels to output; use old fdr method; add assertions to unit test * add unit test for fraction ambiguity * update unit test with detection type assertions * update old unit test * code coverage * try to exclude tests from test coverage? * exclude tests from code coverage pt 2 * fixed null interval, pi_0 estimated differently * add lower bound to pi_0; update old unit test * hybrid of both pi_0 estimation methods * add comments, rename some stuff, add better sd minimum
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