update #27
Merged
update #27
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* [WIP] dynamic mzml connection * reorganize IO. move test data files to DataFiles. dynamic mgf. still some TODO because of weird test data files * remove comment * lots of unit testing * nuspec * hopefully get unit tests to work.. * fix naming stuff * fix .net core issues * some weird guid thing? * fix some small path stuff * fix mgf bug * use old thermo names for fewer changes * rename some more stuff * last rename i think * removed duplicate code from mgf reader; enabled peak filtering for static mgf reader Co-authored-by: Anthony <cesnik@wisc.edu>
* WebClient To Download UniProt Proteome XML or FASTA * new ptmlist count * softened unit test comparisons for specific numbers to less than or equal * Unit Tests Confirming Download of UniProt Proteome * additional unit tests covering more different flavors of downloaed proteome * directory does not exist returns null * return null for formats other than xml or fasta for now * deleted large text file of available proteomes and made it downloadable * add unit test for uniprot columns * unit test evolution improving coverage and reducing code * edit nuspect
* easier charting * unit tests * couple more tests * export to pdf option, XIC stuff, stash some other temp changes * skeleton for heatmap * skeleton for boxplot * add text annotation option * clean up a bit, comments, png export * better looking histogram * done except for unit tests * unit tests * fix unit test * add png and pdf export unit tests * add some more unit tests, removed some unimplemented plot skeletons for code cov reasons * Delete WpfApp1.csproj * Delete MainWindow.xaml.cs * Delete App.xaml * Delete MainWindow.xaml * Delete App.xaml.cs * Delete AssemblyInfo.cs * add oxyplot to nuget dependencies, more unit testing * svg export; auto bind model to plotview * changes for review comments; moved XIC extraction to MsDataFile * fix unit test
* memory efficient indexed mzml writing * hopefully correct checksum calculation * small stuff * finished i think
* fix rare flashLFQ crash * simplify a bit
* new default protein quant * fix some bugs, add unit test * small change to unit test * fix double-log bug * comments, revert some experimental design stuff
* allow hyphens in uniprot protein accessions * delete comments * change unit test
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.