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Releases: nipreps/mriqc

24.0.0

17 Apr 10:02
24.0.0
3fe9046
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Full Changelog: 23.1.1...24.0.0

24.0.0rc8

17 Apr 10:02
24.0.0rc8
00f022e
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24.0.0rc8 Pre-release
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What's Changed

New Contributors

Full Changelog: 23.1.1...24.0.0rc8

24.0.0rc7

15 Apr 08:44
24.0.0rc7
9a56447
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24.0.0rc7 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243
  • FIX: Revise config save/load and update inputs after dropping by @oesteban in #1245
  • ENH: Expose a command-line option for minimum DWI volumes by @oesteban in #1249
  • FIX: Skip short BOLD runs that break outlier detection by @effigies in #1120
  • MAINT: Prevent pandas-originating deprecation warning by @oesteban in #1251
  • ENH: Improve logging of runtime by @oesteban in #1253
  • ENH: Improve documentation and logging of SynthStrip's model by @oesteban in #1254
  • MAINT: Clean up more FutureWarning issued by pandas by @oesteban in #1257
  • ENH: Mechanism to protect config's fields and write out config by @oesteban in #1258
  • FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in #1259
  • FIX: Select filters if modalities are selected by @oesteban in #1261
  • FIX: Address issues that had broken the group reports by @oesteban in #1262
  • FIX: Enable group reports for DWI by @oesteban in #1266
  • Removed pre-commit from development dependencies by @zvi-quantivly in #1269
  • FIX: Finalized naming and connection of DWI IQMs by @oesteban in #1272

New Contributors

Full Changelog: 23.1.1...24.0.0rc7

24.0.0rc6

11 Apr 14:42
24.0.0rc6
4d90e96
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24.0.0rc6 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243
  • FIX: Revise config save/load and update inputs after dropping by @oesteban in #1245
  • ENH: Expose a command-line option for minimum DWI volumes by @oesteban in #1249
  • FIX: Skip short BOLD runs that break outlier detection by @effigies in #1120
  • MAINT: Prevent pandas-originating deprecation warning by @oesteban in #1251
  • ENH: Improve logging of runtime by @oesteban in #1253
  • ENH: Improve documentation and logging of SynthStrip's model by @oesteban in #1254
  • MAINT: Clean up more FutureWarning issued by pandas by @oesteban in #1257
  • ENH: Mechanism to protect config's fields and write out config by @oesteban in #1258
  • FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in #1259

New Contributors

Full Changelog: 23.1.1...24.0.0rc6

24.0.0rc5

11 Apr 10:15
24.0.0rc5
788e42e
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24.0.0rc5 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243
  • FIX: Revise config save/load and update inputs after dropping by @oesteban in #1245
  • ENH: Expose a command-line option for minimum DWI volumes by @oesteban in #1249
  • FIX: Skip short BOLD runs that break outlier detection by @effigies in #1120
  • MAINT: Prevent pandas-originating deprecation warning by @oesteban in #1251
  • ENH: Improve logging of runtime by @oesteban in #1253
  • ENH: Improve documentation and logging of SynthStrip's model by @oesteban in #1254
  • MAINT: Clean up more FutureWarning issued by pandas by @oesteban in #1257
  • ENH: Mechanism to protect config's fields and write out config by @oesteban in #1258

New Contributors

Full Changelog: 23.1.1...24.0.0rc5

24.0.0rc4

10 Apr 08:08
24.0.0rc4
fd394cb
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24.0.0rc4 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243
  • FIX: Revise config save/load and update inputs after dropping by @oesteban in #1245
  • ENH: Expose a command-line option for minimum DWI volumes by @oesteban in #1249
  • FIX: Skip short BOLD runs that break outlier detection by @effigies in #1120

New Contributors

Full Changelog: 23.1.1...24.0.0rc4

24.0.0rc3

10 Apr 08:07
24.0.0rc3
2b3b23c
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24.0.0rc3 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243

New Contributors

Full Changelog: 23.1.1...24.0.0rc3

24.0.0rc2

08 Apr 19:12
24.0.0rc2
9b5c2f6
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24.0.0rc2 Pre-release
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What's Changed

  • FIX: Typo in sorted(..., reverse=True) call by @araikes in #1211
  • MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in #1214
  • CI: flake8 → ruff check by @DimitriPapadopoulos in #1212
  • DOC: Add changelog to documentation by @oesteban in #1217
  • ENH: Revise summary stats extraction and include controlled roundings by @oesteban in #1219
  • ENH: Adds diffusion-related IQMs. by @arokem in #1131
  • ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in #1224
  • ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in #1225
  • ENH: Add new IQM for DWI -- NDC by @oesteban in #1226
  • ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in #1228
  • ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in #1227
  • ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in #1229
  • ENH: Move from DTI to DKI with multishell data by @oesteban in #1230
  • ENH: Add b-vector angular deviations as IQMs by @oesteban in #1233
  • FIX: Duplicate node in anatomical workflow by @oesteban in #1234
  • ENH: Improve error handling and logging by @oesteban in #1238
  • FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in #1239
  • FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in #1240
  • FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in #1241
  • FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in #1242
  • FIX: Sloppy merge by @oesteban in #1243

New Contributors

Full Changelog: 23.1.1...24.0.0rc2

24.0.0rc1

08 Apr 19:11
24.0.0rc1
08aa455
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24.0.0rc1 Pre-release
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What's Changed

New Contributors

Full Changelog: 23.1.1...24.0.0rc1

23.1.1

20 Mar 11:58
23.1.1
4d96184
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Release Notes

A long-overdue hotfix release addressing many bugs generated during the development of the new dMRI workflows and some relating to improvements in handling multi-echo fMRI.
The release also includes one year of maintenance actions and a general code cleanup with Ruff.

What's Changed

New Contributors

Full Changelog: 23.1.0...23.1.1