Skip to content

v0.1.0

Choose a tag to compare

View all tags
@github-actions github-actions released this 22 May 10:55
v0.1.0
036b0cc
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

0.1.0 (2024-05-22)

Features

  • cache references and index; extract to profile (74d1352)
  • disable default adapters (e1f347c)
  • environments: update everything (9c05755)
  • fastp: compress with pigz (8d78a69)
  • fastp: if adaptors are empty, assume the default ones (ec0a097)
  • folders: reorganize properly (2528242)
  • gha: name cache (09ba04e)
  • gha: sort lines (edcd963)
  • gha: split into steps (faa3a4b)
  • modify yaml to be with : notation (b031d87)
  • move profile to new location (ee1a01e)
  • preprocess: add pigz (4de4181)
  • preprocess: rename rules; extract resources to profile (7d39061)
  • preprocess: update env (2fc671f)
  • quantify: no more folder per library (f50e4f0)
  • quantify: remove protected files (256db4c)
  • quantify: rename rules; extract resources to profile; separate index and align (4c28057)
  • raise latency to 1 min (c9fe9c4)
  • readme: precommit everything (c3820a3)
  • readme: update everything (ec9d548)
  • reduce samples to speed up testing (230dae9)
  • reference: rename rules, readability (f279335)
  • renaming: wrong rule names (eb9853c)
  • restructure repo (48819d8)
  • rulegraph: update (c4aa33e)
  • run: add local run script (be1bf21)
  • sample_id, library_id (8a898f3)
  • sample: simplify test dataset (a3a1308)
  • update and lint environments (227929c)
  • update rules to new nomenclature (35a5445)
  • update rules to new nomenclature (af5e988)

Bug Fixes

  • gha: back to custom action (0f5c371)
  • gha: check GHA now that snakemake 8.1.0 is published (6f2b880)
  • gha: disable cache removal; upgrade pre-commit (12d114c)
  • gha: point action to just v1 (4d82cfe)
  • gha: put the downloading into a signle line (dcbdd42)
  • gha: put the downloading into a signle line (cf846b5)
  • gha: reorder lines again (45043bf)
  • gha: typo (339cb5c)
  • gha: update caching action to the custom repo (559109a)
  • gha: update snakemake action to 1.25.1 (2903a78)
  • gha: use temporary action (acb06c6)
  • linting (f137425)
  • remove output dir (e889ed9)
  • rename rules (0b223af)
  • report: downgrade python (b61b282)
  • report: use correct report names (04364fb)
Assets 2
Loading