v1.2.0

1.2.0 (2024-11-12)

Features

• coverm++ (4b170ac)
• demand snakemake 8 (5cec580)
• disable crams in prerpocessing (f329758)
• disable crams in quantify (c618038)
• group jobs by sample, update profile (658ae38)
• import helpers. insert reads into prerpocess. remove per library report (af3f230)
• insert hosts into preprocess (4c285c0)
• multqc handles more files (4d44cad)
• point to base env and clean other (b1b34e0)
• refactor fastp. use wrappers (da1a88d)
• refactor quantify (e63eca6)
• refactor quantify (d59ce09)
• refactor ribodetector (cee57ef)
• refactor ribodetector (bc4f921)
• remove fastp fastqcs from report (9323aec)
• remove fastp functions (5eda525)
• separate bowtie2 env from quant (71a54a6)
• update quantify rule names, fix multiqc output (96cb3e8)

Bug Fixes

• fastp: correct group name (2751414)
• remove mention to ram (e009781)
• star: point to u1, u2 (f6344f1)
• star: point to u1, u2 .fq (fb68d67)

Performance Improvements

• add fastq to group (ee27676)
• disable group in bowtie2 (e3a26e1)
• fastp: default extra string (1c9dfc4)
• profile: increase ram for star index (06bc617)