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doctor validates instruction files: warns when a detected agent has none of its own (AGENTS.md / CLAUDE.md / GEMINI.md / MUSE_CODE.md / .github/copilot-instructions.md, mirrored from the scanners' lists), and warns when project-general instruction files (AGENTS.md / GEMINI.md / MUSE_CODE.md) carry divergent content — different agents would act on different rules. Agent-specific supplemental files (CLAUDE.md, copilot-instructions) are deliberately excluded from the comparison
CI runs doctor over the repo root as an explicit step alongside tests and typecheck