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1. atac_chip_preprocess atac_chip_preprocess Public

   Preprocessing workflow for ATAC-seq and ChIP-seq data

   Nextflow 1

2. rnaseq_preprocess rnaseq_preprocess Public

   Preprocessing of RNA-seq data using salmon and tximport

   Nextflow 1

3. sc_preprocess sc_preprocess Public archive

   Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin

   Nextflow 2

4. circtools circtools Public

   Functions related to analysis of circadian / circular data in R.

   R 1

5. bam2bedgraph bam2bedgraph Public

   A bash script to convert bam files to bedGraph or BigWig files.

   Shell

6. SigGenes SigGenes Public

   Automated differential expression and signature generation from bulk and single-cell data

   R 1