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[Phase 7] Sharrow -- 1 Zone #579

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[Phase 7] Sharrow -- 1 Zone #579

wants to merge 243 commits into from

Commits on Mar 1, 2022

  1. sharrow changes initial dump

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  2. fix for dot function

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Commits on Mar 3, 2022

  1. fix for sharrow 2.0

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  2. require sharrow and xarray

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Commits on Mar 9, 2022

  1. include sh configs in example_mtc

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Commits on Mar 11, 2022

  1. thread stopper when invoking activitysim1

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  2. sh for arc examples

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Commits on Mar 12, 2022

  1. sharrow now allows one missing dim

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  2. recode TAZ's

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  3. clean up logging

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Commits on Mar 13, 2022

  1. comment out traps in ARC model

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Commits on Mar 14, 2022

  1. pypyr

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  2. workflow updates

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Commits on Mar 15, 2022

  1. archives in one dir

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Commits on Mar 17, 2022

  1. demo workflow

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  2. facilitate pypyr as optional

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  3. remove nested wheres

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  4. tweaks for ARC model

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  5. prog and parser for docs

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  6. create --link

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  7. use --link in workflow

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Commits on Mar 18, 2022

  1. norm link paths

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  2. exit with error code on failure

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  3. fallback to copy if lacking windows permissions

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  4. sys exit with failure on uncaught exception

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  5. call correct python

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  6. don't swallow errors

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  7. enable vt support

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  8. re-install previously downloaded files

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  9. archive_base

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  10. use rich

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  11. optional name for skims backing store 

    unique names allows parallel testing of models on the same machine without shared memory conflicts
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Commits on Mar 21, 2022

  1. workflow cleanup 

    some interaction tracing
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  2. small adjustments

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Commits on Mar 22, 2022

  1. toggle sharrow in workflow

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  2. decode TAZ on output

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Commits on Mar 23, 2022

  1. integerize decodings

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  2. resume_after in workflow

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  3. recode_pipeline_columns

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  4. fix script

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  5. fixes for parking location

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Commits on Mar 24, 2022

  1. zarr pre-encoding

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  2. workflow updates

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  3. cleanup for --no-rich

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  4. zarr logging

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Commits on Mar 25, 2022

  1. compile_watch, standalones

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  2. fix example_runner

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Commits on Mar 28, 2022

  1. county workforce flows

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Commits on Mar 31, 2022

  1. workflow mods

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Commits on Apr 1, 2022

  1. fix compare in ARC

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  2. run_flags

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  3. reporting as steps

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Commits on Apr 4, 2022

  1. to_csv_safe

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  2. data inv in report

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  3. load 5 tables

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  4. improve formatting

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  5. distance in report

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Commits on Apr 5, 2022

  1. attach skim data

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Commits on Apr 6, 2022

  1. report_step 1

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  2. more validation viz

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Commits on Apr 7, 2022

  1. tablesets

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  2. semcog cleanup 1

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Commits on Apr 8, 2022

  1. adjustments for semcog model

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  2. transform_data

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  3. cdap to report

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Commits on Apr 9, 2022

  1. instrument, workstep

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Commits on Apr 11, 2022

  1. semcog string eval to preprocessor

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  2. no at in preprocessor

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  3. temp tour_mode

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  4. skims not in preproc

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  5. sigh

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  6. deoptimize for compatibility

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  7. prioritize explicit return_names

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  8. clean up

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  9. cleanup

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Commits on Apr 12, 2022

  1. ordinal_distribution

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  2. Merge commit 'b3d1d61e4a0f88a6230fd389c083d3a995c0ae34' into with-sha… 

    …rrow-2

# Conflicts:
#	.gitignore
#	activitysim/benchmarking/asv.conf.json
#	activitysim/benchmarking/benchmarks/mtc1full.py
#	activitysim/benchmarking/benchmarks/sandag_example.py
#	activitysim/benchmarking/componentwise.py
#	activitysim/cli/benchmark.py
#	activitysim/cli/create.py
#	activitysim/cli/main.py
#	activitysim/cli/run.py
#	activitysim/core/pipeline.py
#	conda-environments/activitysim-dev.yml
#	conda-environments/activitysim-test-larch.yml
#	conda-environments/activitysim-test.yml
#	setup.py
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Commits on Apr 18, 2022

  1. start on two-zone

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Commits on Apr 25, 2022

  1. psrc reaches first flow

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  2. clean up dims

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  3. two zone yay?

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Commits on May 16, 2022

  1. work on 2-zone, clean up interface

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  2. version tag from scm

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  3. move modules to reporting

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Commits on May 17, 2022

  1. install env, run as subprocess

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  2. reference in env

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  3. skip missing cols in composite_log

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  4. mtc_full ref

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Commits on May 18, 2022

  1. fix reference run

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  2. relabel tablesets

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  3. workplace location w data dict

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  4. create docs

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  5. doc cleanup

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  6. reorg, memory use

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  7. arc with legacy-1.0.4

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  8. use shell for env install

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  9. flag progression on env

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  10. pass args as string for shell

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  11. log shell command

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  12. make intermediate dirs [ci skip]

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  13. fix for windows

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Commits on May 19, 2022

  1. fix reporting for 1 run on windows

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  2. subproc single thread by default [ci skip]

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Commits on Jun 1, 2022

  1. fix random to old repro

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  2. memory sidecar

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  3. show me

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  4. record CPU usage

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  5. peak mem use report

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  6. arc contrasts

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  7. arc outputs

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  8. no resume_after if no breadcrumbs

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Commits on Jun 2, 2022

  1. fix arc full hh num

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  2. chunk training mode def in workflow

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  3. resilient sidecar

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  4. stream mp output via temp file

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Commits on Jun 3, 2022

  1. machine_info in report

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  2. config flag to disable zarr

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  3. remove extra CR for windows

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  4. demo memory stress test

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Commits on Jun 5, 2022

  1. report settings

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  2. no memory profile on multiprocess

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  3. extra timing log points for multiprocess

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  4. fix redownload error

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  5. allow multi_thread

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  6. disable_zarr and report settings

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  7. blacken

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Commits on Jun 7, 2022

  1. remove pointless assertions

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  2. fix timetable tests for optimized code

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  3. changed error message

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  4. Merge branch 'develop' into with-sharrow

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  5. blacken

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Commits on Jun 8, 2022

  1. require pypyr for workflows

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  2. test TAZ recode in legacy model

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  3. test sharrow

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Commits on Jun 10, 2022

  1. require sharrow 2.2

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  2. include pypyr, zarr in test envs

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  1. check for travis

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  2. don't let coveralls fail tasks

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  1. auto offest_preprocessing detection, ARC tests

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  2. cache arc test for travis

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  3. offset_preprocessing for pipeline load

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  4. exclude sharrow cached flows from pycodestyle

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  5. tests in github actions

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  6. use unique env file

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  7. install without deps

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  8. other core tests

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Commits on Jun 15, 2022

  1. fix sandag tests

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  2. add mtc tests to GA

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  3. top constrain pytables

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  4. fix psrc test

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  5. sharrowcache

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Commits on Jun 16, 2022

  1. matrixed example models

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  2. nested hashing

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  3. better name

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  4. comprehensive regional test matrix

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  5. fix workflow

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  6. don't fail-fast on regional models, depend only on linux foundation

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  7. fix GA

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  8. fix for multizone on GA

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  9. REGION_DEFS

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Commits on Jun 17, 2022

  1. reset cache

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  2. repair sandag xborder model

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  3. blacken

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  4. fix macos cache

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  5. aggressive caching

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Commits on Jun 19, 2022

  1. unpin numpy

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Commits on Jun 20, 2022

  1. test estimation, cache artifacts

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Commits on Jun 21, 2022

  1. sandag sharrow testing

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Commits on Jun 22, 2022

  1. sandag-1zone-mini

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  2. init chunked workflow

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  3. sandag-1zone-complete

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  4. bugfix

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  5. chunked sandag 1

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Commits on Jun 23, 2022

  1. warn dont fail

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  2. workflow updates

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Commits on Jun 24, 2022

  1. skipable chunk training

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  2. blacken

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Commits on Jul 12, 2022

  1. chunk size detection

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  2. use settings_file in compile

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  3. fix recursion

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Commits on Jul 13, 2022

  1. fix deadlock in reference MP

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  2. blacken

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  3. comprehensive workflow

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  4. Ensure integer types for numbers

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  5. add memory_profiling to comprehensive

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  6. add ARC single thread to comprehensive

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  7. workflow notes

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Commits on Jul 14, 2022

  1. repair integers

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  2. avoid interaction_df in interaction_simulate if no skims or tracing

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  3. trim memory peak in time table

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  4. forced garbage collection option

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Commits on Jul 15, 2022

  1. short circuit chunk logic on disabled chunking

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  2. swallow errors in workflow

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  3. settings for mtc_comprehensive

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  4. fix num_processes

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  5. sandag mp chunked

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  6. sandag create for mp

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  7. workflow name for chunked

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Commits on Jul 16, 2022

  1. swallow errors in chunked

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Commits on Jul 22, 2022

  1. seperate chunk cache for legacy and sharrow

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  2. default chunk size should be None

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  3. documentation cleanup

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  4. build docs

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  5. dummy code in setup.py

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Commits on Jul 23, 2022

  1. docbuild env

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  2. blacken

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  3. clean up workflow

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  4. cache separate leg and sh

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  5. fix assertion error when chunking is disabled and adaptive chunking i… 

    …s short circuited
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  6. blacken

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Commits on Jul 25, 2022

  1. repair fallback version

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  2. sandag 1zone mp workflow

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Commits on Jul 27, 2022

  1. arc_mp

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  2. fix cols on ARC

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Commits on Aug 1, 2022

  1. turn on chunk training by default

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Commits on Aug 6, 2022

  1. Merge branch 'develop' into sharrow-black 

    # Conflicts:
#	.travis.yml
#	activitysim/__init__.py
#	activitysim/abm/models/__init__.py
#	activitysim/abm/models/initialize_los.py
#	activitysim/abm/models/location_choice.py
#	activitysim/abm/models/parking_location_choice.py
#	activitysim/abm/models/telecommute_frequency.py
#	activitysim/abm/models/transit_pass_ownership.py
#	activitysim/abm/models/transit_pass_subsidy.py
#	activitysim/abm/models/trip_destination.py
#	activitysim/abm/models/trip_matrices.py
#	activitysim/abm/models/trip_mode_choice.py
#	activitysim/abm/models/trip_scheduling_choice.py
#	activitysim/abm/models/util/tour_destination.py
#	activitysim/abm/models/util/tour_od.py
#	activitysim/abm/models/util/vectorize_tour_scheduling.py
#	activitysim/abm/tables/accessibility.py
#	activitysim/abm/tables/households.py
#	activitysim/abm/tables/skims.py
#	activitysim/abm/test/test_misc/setup_utils.py
#	activitysim/abm/test/test_misc/test_load_cached_accessibility.py
#	activitysim/abm/test/test_pipeline/test_pipeline.py
#	activitysim/cli/create.py
#	activitysim/cli/main.py
#	activitysim/cli/run.py
#	activitysim/cli/test/test_cli.py
#	activitysim/core/chunk.py
#	activitysim/core/config.py
#	activitysim/core/expressions.py
#	activitysim/core/inject.py
#	activitysim/core/input.py
#	activitysim/core/interaction_sample.py
#	activitysim/core/interaction_sample_simulate.py
#	activitysim/core/interaction_simulate.py
#	activitysim/core/logit.py
#	activitysim/core/los.py
#	activitysim/core/mp_tasks.py
#	activitysim/core/pipeline.py
#	activitysim/core/random.py
#	activitysim/core/simulate.py
#	activitysim/core/skim_dictionary.py
#	activitysim/core/steps/output.py
#	activitysim/core/test/test_input.py
#	activitysim/core/test/test_logit.py
#	activitysim/core/test/test_timetable.py
#	activitysim/core/timetable.py
#	activitysim/core/tracing.py
#	activitysim/core/util.py
#	activitysim/estimation/larch/general.py
#	activitysim/estimation/test/test_larch_estimation.py
#	activitysim/examples/example_arc/test/simulation.py
#	activitysim/examples/example_manifest.yaml
#	activitysim/examples/example_mtc/test/test_mtc.py
#	activitysim/examples/example_mtc_extended/test/test_mtc_extended.py
#	activitysim/examples/example_multiple_zone/test/simulation.py
#	activitysim/examples/example_multiple_zone/test/test_multiple_zone.py
#	activitysim/examples/example_psrc/test/simulation.py
#	activitysim/examples/example_sandag/test/output/.gitignore
#	activitysim/examples/example_sandag/test/output/cache/.gitignore
#	activitysim/examples/example_sandag/test/output/trace/.gitignore
#	activitysim/examples/example_sandag/test/simulation.py
#	activitysim/examples/example_sandag/test/test_sandag.py
#	activitysim/examples/example_sandag_xborder/extensions/reassign_tour_purpose.py
#	activitysim/examples/example_sandag_xborder/scripts/reduce_sandag_cb_skims_for_github.py
#	activitysim/examples/example_sandag_xborder/test/test_sandag_xborder.py
#	activitysim/examples/example_semcog/extensions/__init__.py
#	activitysim/examples/example_semcog/extensions/telecommute_frequency.py
#	activitysim/examples/example_semcog/extensions/transit_pass_ownership.py
#	activitysim/examples/example_semcog/extensions/transit_pass_subsidy.py
#	activitysim/examples/example_semcog/scripts/reindex_household_ids.py
#	activitysim/examples/placeholder_multiple_zone/marin_crop.py
#	activitysim/examples/placeholder_psrc/configs/logging.yaml
#	activitysim/examples/placeholder_psrc/configs/settings.yaml
#	activitysim/examples/placeholder_psrc/test/simulation.py
#	activitysim/examples/placeholder_psrc/test/test_psrc.py
#	activitysim/examples/placeholder_sandag/configs_1_zone/logging.yaml
#	activitysim/examples/placeholder_sandag/test/configs_sharrow/network_los.yaml
#	activitysim/examples/placeholder_sandag/test/configs_sharrow/settings.yaml
#	activitysim/examples/placeholder_sandag/test/output_1/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_1/cache/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_1/trace/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_2/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_2/cache/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_2/trace/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_3/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_3/cache/.gitignore
#	activitysim/examples/placeholder_sandag/test/output_3/trace/.gitignore
#	activitysim/examples/placeholder_sandag/test/simulation.py
#	activitysim/examples/prototype_arc/configs/legacy-1.0.4/logging.yaml
#	activitysim/examples/prototype_arc/configs/legacy-1.0.4/network_los.yaml
#	activitysim/examples/prototype_arc/configs/legacy-1.0.4/settings.yaml
#	activitysim/examples/prototype_arc/configs/legacy-1.0.4/trip_destination_annotate_trips_preprocessor.csv
#	activitysim/examples/prototype_arc/test/configs_recode/network_los.yaml
#	activitysim/examples/prototype_arc/test/configs_recode/settings.yaml
#	activitysim/examples/prototype_arc/test/configs_sharrow/network_los.yaml
#	activitysim/examples/prototype_arc/test/configs_sharrow/settings.yaml
#	activitysim/examples/prototype_arc/test/test_arc.py
#	activitysim/examples/prototype_marin/scripts/marin_crop.py
#	activitysim/examples/prototype_marin/test/test_marin.py
#	activitysim/examples/prototype_mtc/configs/trip_destination.csv
#	activitysim/examples/prototype_mtc/configs/trip_destination_annotate_trips_preprocessor.csv
#	activitysim/examples/prototype_mtc/configs/trip_destination_sample.csv
#	activitysim/examples/prototype_mtc/configs/trip_mode_choice.csv
#	activitysim/examples/prototype_mtc/configs_chunktrain/logging.yaml
#	activitysim/examples/prototype_mtc/configs_chunktrain/settings.yaml
#	activitysim/examples/prototype_mtc/configs_production/logging.yaml
#	activitysim/examples/prototype_mtc/configs_production/settings.yaml
#	activitysim/examples/prototype_mtc/configs_sh/settings.yaml
#	activitysim/examples/prototype_mtc/configs_sh_compile/settings.yaml
#	activitysim/examples/prototype_mtc/sh-exercise.sh
#	activitysim/examples/prototype_mtc/test/configs_recode/network_los.yaml
#	activitysim/examples/prototype_mtc/test/configs_recode/settings.yaml
#	activitysim/examples/prototype_mtc/test/configs_sharrow/network_los.yaml
#	activitysim/examples/prototype_mtc/test/configs_sharrow/settings.yaml
#	activitysim/examples/prototype_mtc_extended/test/output/.gitignore
#	activitysim/examples/prototype_mtc_extended/test/output/cache/.gitignore
#	activitysim/examples/prototype_mtc_extended/test/output/trace/.gitignore
#	activitysim/examples/prototype_sandag_xborder/simulation.py
#	activitysim/examples/prototype_semcog/__init__.py
#	activitysim/examples/prototype_semcog/configs/logging.yaml
#	activitysim/examples/prototype_semcog/configs/settings.yaml
#	activitysim/examples/prototype_semcog/configs/tour_mode_choice.csv
#	activitysim/examples/prototype_semcog/configs/trip_destination.csv
#	activitysim/examples/prototype_semcog/configs/trip_destination_annotate_trips_preprocessor.csv
#	activitysim/examples/prototype_semcog/configs/trip_destination_sample.csv
#	activitysim/examples/prototype_semcog/configs/work_from_home.csv
#	activitysim/examples/prototype_semcog/configs/work_from_home.yaml
#	activitysim/examples/prototype_semcog/configs/work_from_home_annotate_persons_preprocessor.csv
#	activitysim/examples/prototype_semcog/extensions/telecommute_frequency.py
#	activitysim/examples/prototype_semcog/extensions/transit_pass_ownership.py
#	activitysim/examples/prototype_semcog/extensions/transit_pass_subsidy.py
#	activitysim/examples/prototype_semcog/simulation.py
#	activitysim/examples/prototype_semcog/test/test_semcog.py
#	docs/conf.py
#	docs/models.rst
#	ez_setup.py
#	other_resources/scripts/build_omx.py
#	setup.py
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  2. fix merge error

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  3. change linter to Black

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  4. merge error, lost timing notes

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  5. merge error in testing

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  6. install black in Github Actions

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  7. black and isort again

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  8. ignore _generated_version.py

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  9. testing cleanup

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  10. pre-commit hooks

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  11. blacken, flake8 config

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  12. fix regional test names for new scheme

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  13. clean naming

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  14. black linting on crossplatform

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  15. re-enable sharrow testing

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  16. stop emitting output dir 

    it fails later tests
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Commits on Aug 7, 2022

  1. trace files in nested directories 

    because windows
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  2. allow unused vars

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  3. fix merge problems in proto mtc

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  4. swap files for xborder model

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Commits on Aug 8, 2022

  1. repair ARC MP

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  2. Merge commit 'e92ac727454b1f1027fb7146a1ef130be1509580' into sharrow-… 

    …black

# Conflicts:
#	activitysim/core/config.py
#	activitysim/examples/example_manifest.yaml
#	activitysim/examples/prototype_arc/configs/settings_mp.yaml
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  3. remove run_flags

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Commits on Aug 9, 2022

  1. settings docs 

    for base activitysim
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  2. add new settings to docs

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  3. docs update for publishing on CS fork

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  4. update docs to ref black not pycodestyle

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Commits on Sep 12, 2022

  1. protect memory profile

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