add tidyverse version

AndersenLab · May 13, 2023 · d0d5b77 · d0d5b77
1 parent 55eacab
commit d0d5b77
Showing 1 changed file with 3 additions and 14 deletions.
diff --git a/env/Dockerfile b/env/Dockerfile
@@ -1,24 +1,13 @@
 FROM continuumio/miniconda
 MAINTAINER Katie Evans <katiesevans9@gmail.com>
 
-#COPY conda.yml .
-#RUN \
-#   conda env update -n root -f conda.yml \
-#&& conda clean -a
-
-RUN conda install -c bioconda bcftools=1.9
-RUN conda install -c conda-forge pandoc=2.12
-RUN conda install -c bioconda plink=1.90b6.12
-RUN conda install -c bioconda bedtools=2.29.2
-RUN conda install -c conda-forge r=3.6.0
-RUN conda install -c conda-forge mscorefonts
-RUN conda install -c conda-forge r-data.table r-lme4 r-knitr r-markdown
+RUN conda install -c bioconda bcftools=1.9 plink=1.90b6.12 bedtools=2.29.2
+RUN conda install -c conda-forge pandoc=2.12 r=3.6.0 mscorefonts
+RUN conda install -c conda-forge r-lang r-tidyverse=1.3.0 r-data.table r-lme4 r-knitr r-markdown r-futile.logger
 # RUN conda install -c r r-boot r-sommer
-RUN conda install -c conda-forge r-futile.logger
 
 RUN Rscript -e "install.packages('boot', dependencies=TRUE, repos='http://cran.us.r-project.org')"
 RUN Rscript -e "install.packages('sommer', dependencies=TRUE, repos='http://cran.us.r-project.org')"
-RUN Rscript -e "install.packages('tidyverse', dependencies=TRUE, repos='http://cran.us.r-project.org')"
 
 
 # install other tools not avalible on conda cloud