The code was developed and tested using python 3.8.
To install python dependencies run: pip install -r requirements.txt
- PDB_to_DSSP.py - This script is used to convert PDB format files to DSSP format files containing secondary structure information on the https://www3.cmbi.umcn.nl/xssp/ website.
- get_StructureData.py - This script is mainly used to obtain protein distance maps and extract secondary structure information.
- Contact_Distance_Map.py - This script is used to process distance maps into contact maps as pre-processed data to be input.
- Grain protein sequence source data is available at https://www.uniprot.org/
- The structural data can be downloaded at https://alphafold.com/download
- Gene ontology term files in OBO format can be downloaded at https://geneontology.org/docs/download-ontology/