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The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)
Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas
Web application for searching RNA 3D structures.
Python implementation of FR3D
Matlab code to model, find, and count RNA base triples
JAR3D webserver for matching RNA loop sequences with RNA 3D motifs
Development of "alignment server" in conjunction with the Gutell Lab at UT-Austin.
Some utilities for dealing with RNA structure
The official repository for R3DAlign, a program for aligning RNA 3D structures.
Matlab programs to detect local and large-scale conformational changes in RNA 3D structures
A place to put code for displaying RNA protein interaction data
Methods and data files to color RNA 3D structures
Java-based Alignment of RNA using 3D structure
Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures
Basepair Catalog implemented on NDB
RNA Base-stacking Catalog
Translate unit Ids from old to new formats
This repository contains all archived versions of FR3D committed to one repository. Has only historical interest. Not maintained.