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cfDNAlab 0.4.0
BREAKING CHANGES:
cfdna fcoverage --per-window summary-stats*output TSV columns are renamed and deduplicated.- For
cfdna fcoverage --normalize-by-length, aggregate TSV headers now usefragment_massinstead ofcoveragefor the length-normalized signal columns.
Other changes:
- Allows reading BAM files from URLs via the
curlfeature inrust-htslib. This addsurlas dependency. - Updates
rust-htslibdependency to1.0.0and reduces its feature set for fewer dependencies. - Enables
libdeflate-sysfor faster BAM reading. bam-to-bamandfrag-to-bamwrites.bam.baiindex files alongside the BAM outputs.- Requires
bindgen >=0.69.5, <0.70to remove issue with0.69.4when users don't install with lockfile. - Adds
--lockedto install commands in installation instructions.