fix the SAM header parser (#377)

BioJulia · Feb 15, 2017 · 789a12f · 789a12f
1 parent 6cc2e4f
commit 789a12f
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/align/hts/sam/reader.jl b/src/align/hts/sam/reader.jl
@@ -17,6 +17,7 @@ type SAMReader <: Bio.IO.AbstractReader
         reader = new(Ragel.State(samparser_start, input), SAMHeader())
         while !eof(input) && BufferedStreams.peek(input) == UInt8('@')
             # NOTE: This reads a header line, not the first record.
+            reader.state.cs = samparser_start
             @assert read(reader) == SAMRecord()
         end
         return reader