Sequence alignment tools
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jakobnissen and BenJWard 🐛 Update covert(BAM.Record, x::Vector{UInt8}) (#23)
Implement proposed solution in issue #22
Added test for the fixed function
Changed the format of some test cases which previously relied on trailing whitespace to work.
Latest commit d665030 Dec 11, 2018


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BioAlignments provides alignment algorithms, data structures, and I/O tools for SAM and BAM file formats.


Install BioAlignments from the Julia REPL:

using Pkg
#Pkg.add("BioAlignments") for julia prior to v0.7

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.


BioAlignments is tested against julia 0.7 and 1.X on Linux, OS X, and Windows.

Latest release Latest build status
julia07 travis appveyor coverage


We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the CONTRIBUTING file provided with every BioJulia package package for detailed contributor and maintainer guidelines.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.


Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project Your logo will show up here with a link to your website.


If you have a question about contributing or using BioJulia software, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.