Package: SOUNDBoard
Title: Statistically-informed Multi-Omics Reports for Tumor and Other Boards
Version: 0.0.59
Authors@R: c(
    person("Martin", "Morgan", email = "martin.morgan@roswellpark.org",
        role = "aut"),
    person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
        role = "aut"),
    person("Bioconductor", "Maintainer", email="maintainer@bioconductor.org",
        role = "cre"))
Description: This package provides facilities for producing reports
    that communicate results of multi-'Omics analyses. The reports are
    destined for consumption by tumor board or other clinician /
    scientist entities, rather than bioinformaticians. The reports
    adopt a consistent interface to result presentation. Guiding
    principles include: inclusion of uncertainty; appropriate color
    schemes and layouts; appropriate interactivity; re-use across
    studies. The work is part of the SOUND project
    (http://www.sound-biomed.eu/), with funding from the European
    Commission Horizon 2020 program.
Depends: R (>= 3.4.0), dplyr
Imports:
    methods,
    stats,
    magrittr,
    ggplot2,
    RSQLite,
    BiocFileCache,
    dbplyr,
    knitr, 
    bookdown,
    DT,
    plotly,
    DBI,
    qtlcharts,
    RColorBrewer,
    rDGIdb,
    shiny,
    S4Vectors
Suggests:
    BiocStyle,
    rmarkdown,
    curatedTCGAData
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Collate:
    'SOUNDBoard_html.R'
    'SOUNDBoard-class.R'
    'SOUNDManager-class.R'
    'sbsave-load-report.R'
    'SOUNDWidget-class.R'
    'ShinyWidget-class.R'
    'HeatmapWidget-class.R'
    'DGIdbWidget-class.R'
    'sql.R'
    'rmd.R'
    'utilities.R'
    'zzz.R'