GitHub is home to over 40 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
Bioinformatic pipeline for identifying dsDNA breaks induced by designer nucleases (ie. Cas9).
[Dev] Combined HIV integration site and genomic variant analysis pipeline.
Code and metadata for viral transmission project
Latent Dirichlet Process Prior Allocation
Helper scripts for LSF cluster usage
calculate GC percentage for reference genomes with multiple windows
Code for "Sera from individuals with narrowly focused influenza virus antibodies rapidly select viral escape mutations in ovo", A. Davis, 2018
Supporting metadata for the eosinophilic esophagitis study (PRJNA451431)
Single patient integration sites report
Code for generating figures and statistics for bilaterian animal microbiome project
ROC curve area matrix and heat map
maintain the list of cancer-associated genes
Functions for annotating GRanges objects
Data and analysis releated to the Pediatric Longitudinal Study of Elemental Diet and Stool Microbiome Composition study
make customer UCSC genome browser hub from bed files