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14 Open 19 Closed
14 Open 19 Closed
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Issues list

[BUG] Inconsistent scrubbed fastq folder names bug Something isn't working
#77 opened Nov 6, 2024 by arianna-smith
@sam-baird
1
[REQUEST] Use BED file as input to Medaka for primer trimming
#75 opened Nov 4, 2024 by sam-baird
@sam-baird
1
[BUG/REQUEST] Update Artic to 1.5.2 for variant calling improvement and minor bug fix bug Something isn't working
#71 opened Oct 31, 2024 by arianna-smith
@sam-baird
1
[REQUEST] Do not overwrite existing files by default
#68 opened Oct 30, 2024 by sam-baird
@sam-baird
2
[REQUEST] samtools depth -aJ
#41 opened Sep 18, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
1
[FEATURE] S gene coverage requirement
#39 opened Sep 18, 2024 by molly-hetheringtonrauth
@sam-baird
2
[REQUEST] Change sample-level workflows to set level and call downstream workflows as subworkflows
#38 opened Sep 4, 2024 by arianna-smith Ethereal Espresso☕
@arianna-smith
1
[REQUEST] Add version number as subfolder of terra_outputs effort - medium enhancement New feature or request priority - high
#35 opened Jul 31, 2024 by arianna-smith
2 tasks
Ethereal Espresso☕
@arianna-smith
Invalid escape sequence in newer versions of python bug Something isn't working effort - low priority - low
#31 opened Jun 7, 2024 by danpolanco Whimsical Waffle 🧇
@danpolanco
1
[FEATURE] Remove unused data fields in summary results file effort - medium priority - low
#30 opened Jun 6, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
1
[FEATURE] Version capture consistency across workflows
#29 opened May 20, 2024 by molly-hetheringtonrauth Ethereal Espresso☕
@arianna-smith
2
Rename WDL tasks to be more specific, standardized, or otherwise improved effort - low enhancement New feature or request priority - low question Further information is requested
#22 opened Apr 12, 2024 by danpolanco Whimsical Waffle 🧇
3
Update to Nextclade v3 and deprecate parser effort - medium enhancement New feature or request priority - low
#18 opened Mar 15, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
@danpolanco @molly-hetheringtonrauth
2
Right size obvious tasks to alleviate resource exhaustion from CPU quota effort - medium enhancement New feature or request priority - low
#10 opened Jan 23, 2024 by danpolanco Whimsical Waffle 🧇
1
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