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CIDC-1378 handle versioned clinical CSVs #550

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merged 2 commits into from
Oct 7, 2022
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scvannost
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What

Discovered in reprocessing of 10104/ABTC1603 clinical data under new scheme where first line includes a version date.

How

If it exists, just skip it.

Checklist

Please include and complete the following checklist. You can mark an item as complete with the - [x] prefix:

  • Tests - Added unit tests for new code, regression tests for bugs and updated the integration tests if required
  • Formatting & Linting - black and flake8 have been used to ensure styling guidelines are met
  • Type Annotations - All new code has been type annotated in the function signatures using type hints
  • Docstrings - Docstrings have been provided for functions
  • Documentation - Documentation in docs/ has be regenerated and README and CHANGELOG have been updated to explain major changes & new features
  • Package version - Manually bumped the Schemas package version in cidc_schemas/__init__.py

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codeclimate bot commented Oct 7, 2022

Code Climate has analyzed commit 51a6f3d and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 100.0% (50% is the threshold).

This pull request will bring the total coverage in the repository to 94.2% (0.1% change).

View more on Code Climate.

@scvannost scvannost merged commit 2b061d3 into master Oct 7, 2022
@scvannost scvannost deleted the clinical-versions branch October 7, 2022 20:12
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2 participants