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CIDC-1481 add MIBI support #551

Merged
merged 3 commits into from
Oct 11, 2022
Merged

CIDC-1481 add MIBI support #551

merged 3 commits into from
Oct 11, 2022

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scvannost
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What

Implement support for MIBI assay with 4 files as provided in examples from Sricharan at Standford.

Why

How

  • 3 example datasets all followed the same format.
  • Further metadata is stored in the OME.TIFF headers

Remarks

No real network data to ensure their adherence to this structure

Checklist

Please include and complete the following checklist. You can mark an item as complete with the - [x] prefix:

  • Tests - Added unit tests for new code, regression tests for bugs and updated the integration tests if required
  • Formatting & Linting - black and flake8 have been used to ensure styling guidelines are met
  • Type Annotations - All new code has been type annotated in the function signatures using type hints
  • Docstrings - Docstrings have been provided for functions
  • Documentation - Documentation in docs/ has be regenerated and README and CHANGELOG have been updated to explain major changes & new features
  • Package version - Manually bumped the Schemas package version in cidc_schemas/__init__.py

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codeclimate bot commented Oct 7, 2022

Code Climate has analyzed commit c839ffb and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 100.0% (50% is the threshold).

This pull request will bring the total coverage in the repository to 94.2% (0.1% change).

View more on Code Climate.

@scvannost scvannost merged commit 3399192 into master Oct 11, 2022
@scvannost scvannost deleted the mibi branch October 11, 2022 14:38
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2 participants