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PyIMOD is a set of Python classes that enable the manipulation of IMOD model files. PyIMOD supports both the reading/writing of existing model files as well as their generation from scratch. Once initialized, model, object, and contour properties can be easily edited. In addition, a variety of filters exist for separating objects based on size, distance from reference objects, and morphological parameters. PyIMOD was inspired by the MatTomo set of Matlab classes for IMOD.

#Tutorials

• Getting Started

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###Getting Started Test text.

#Classification Features

1. Volume
2. Surface Area
3. Surface Area-to-Volume Ratio
4. Sphericity
5. Quadratic fit parameter for contour area
6. R^2 for contour area
7. Quadratic fit parameter for contour length
8. R^2 for contour length
9. Max change in Euclidean distance between centroids of two consecutive slices
10. Mean change in Euclidean distance between centroids of two consecutive slices
11. Variance in Euclidean distance between centroids of two consecutive slices
12. Max distance from centroid to contour point
13. Number of contours above centroid
14. Number of contours below centroid
15. Min contour circularity
16. Max contour circularity
17. Mean contour circularity
18. Variance contour circularity
19. Min contour aspect ratio
20. Max contour aspect ratio
21. Mean contour aspect ratio
22. Variance contour aspect ratio
23. Min contour ratio of semi-major to semi-minor axis lengths
24. Max contour ratio of semi-major to semi-minor axis lengths
25. Mean contour ratio of semi-major to semi-minor axis lengths
26. Variance contour ratio of semi-major to semi-minor axis lengths
27. Min contour eccentricity
28. Max contour eccentricity
29. Mean contour eccentricity
30. Variance contour eccentricity