Computational Systems Biology/Integrative Genomics

Repositories

• regulaciontrans-gdcmanifests

  Proyecto: Evaluación de la regulación trans en cáncer: un enfoque de biología de sistemas
  0 0 0 0 Updated Jun 12, 2020

• ARACNE-multicore
  Shell 0 1 0 0 Updated Jun 9, 2020

• KEGG-IntegratedNetwork

  A repository with the KEGG integrated network and the code to study its robustness
  Python 0 0 0 0 Updated Jun 5, 2020

• Arabidopsis_TMR

  Transcriptional Master Regulators of mild drought in growing Arabidopsis leaves
  GPL-3.0 0 0 0 0 Updated Mar 27, 2020

• PAM50multiomics

  Multi-omic regulation of the PAM50 gene signature in breast cancer molecular subtypes
  R 0 0 0 0 Updated Mar 6, 2020

• pychromnet

  Functions to create coarse-grained gene networks at chromosomal level in python.
  Jupyter Notebook 0 0 2 0 Updated Feb 26, 2020

• adjtoadjmatrix

  Script to convert an adj file (parallel aracne output) to an adjmatrix (upper triangle)
  R 0 1 0 0 Updated Nov 28, 2019

• RNA-seq

  Pipeline for RNA-seq data
  R LGPL-3.0 3 1 1 0 Updated Aug 7, 2019

• regulaciontrans-pipeline

  Proyecto: Evaluación de la regulación trans en cáncer: un enfoque de biología de sistemas
  R 1 0 0 0 Updated Jul 27, 2019

• Back-to-basics
  Jupyter Notebook 1 0 0 0 Updated Jun 26, 2019

• curso_redes_2019-2

  Material para el curso "Estructura y dinámica de redes biológicas"
  GPL-3.0 5 0 0 0 Updated May 8, 2019

• tmr_search

  Transcriptional Master Regulator search in Cancer, a pipeline using MARINa
  R GPL-3.0 2 5 0 0 Updated Apr 10, 2019

• CapacitacionAYYE

  Repositorio de capacitación
  R MIT 1 0 0 0 Updated Apr 3, 2019

• Computational-Genomics

  Scripts and programs for Computational Genomics within my group
  Perl 0 0 0 0 Updated Mar 3, 2019

• Metabolism_Obesity

  Data Mining on genomic and clinical data on metabolic diseases
  0 0 0 0 Updated Feb 14, 2019

• parallel-aracne

  Pipeline for using aracne in INMEGEN cluster.
  R 0 1 0 0 Updated Sep 10, 2018

• breast_cancer_networks

  Breast cancer studies
  Shell GPL-3.0 2 1 1 0 Updated Sep 6, 2018

• BioNetworkInference_ModularAnalysis

  Forked from guillermodeandajauregui/NIMEA

  Network Inference and Module Enrichment Analysis, from cancer expression datasets
  R MIT 1 0 0 0 Updated Jul 17, 2018

• WordStringFreq

  Tools for Word and String Frequency Counts for Data / Literature Mining in R
  R 1 2 0 0 Updated Dec 27, 2017

• Repurposing-targets-in-breast-cancer

  Repurposing pharmacological targets in breast cancer
  R GPL-3.0 0 0 0 0 Updated Dec 6, 2017

• CSB-IG.github.io
  CSS GPL-3.0 0 0 1 0 Updated Nov 29, 2017

• pa3bc

  Pathway Analyses of Apoptosis and Autophagy on Breast Cancer
  R GPL-3.0 3 2 0 0 Updated Jul 6, 2017

• miRNAseq_rnw

  miRNAseq regulatory networks
  R GPL-3.0 2 3 0 0 Updated Mar 17, 2017

• MEF2C-network

  Transcription Factor networks from Fantom DB.
  Python GPL-3.0 0 0 0 0 Updated Jan 19, 2017

• midist

  Distribution plot of MI from adjacency matrices.
  R GPL-3.0 1 0 0 0 Updated Nov 4, 2016

• rnw

  regulation network workflow
  R GPL-3.0 2 2 9 (4 issues need help) 0 Updated Aug 24, 2016

• circos_rnaseq_tcga_brca

  Circos plots of rnaseq interactions in tcga brca samples.
  Python GPL-3.0 0 1 0 0 Updated Jul 21, 2016

• bibliometrics

  for all your bibliographic reviewing needs
  Python GPL-3.0 0 0 0 0 Updated Apr 25, 2016

• enrichmentator
  R GPL-3.0 0 0 0 0 Updated Apr 14, 2016

• target-space

  Clustering genes by pathways, expression levels in cancer subtypes.
  Python GPL-3.0 0 0 0 0 Updated Apr 4, 2016