This is a repository for holding useful tutorial datasets to accompany the Dry Lab Manual.
The HD_PBMC_3prime data directory contains 4 healthy donor PBMC datasets and a tsv containing associated metadata. These data were downloaded from the Gene Expression Omnibus from accession number GSE139324.
The purpose of these files is simply to have some data for testing workflows.
The PBMC_integration_datasets directory contains HD_PBMC_1 and HD_PBMC_2 from the HD_PBMC_3prime data directory, but also contains two in-house healthy donor PBMC datasets generated using 10X Genomics 5' chemistry. Also included is a txt file containing metadata for these samples.
The purpose of these files is to have a toy dataset with known batch effects to test integration workflows.