results notebooks + bugfix mapstack notebook #37

Deltares · Aug 23, 2021 · b813b15 · b813b15
1 parent 62de2da
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diff --git a/docs/examples/index.rst b/docs/examples/index.rst
@@ -32,7 +32,8 @@ Examples
 .. toctree::
    :maxdepth: 1
 
-   Convert wflow staticmaps netcdf to raster files <examples/convert_staticmaps_to_gtiff>
+   Convert wflow staticmaps netcdf to raster files <examples/convert_staticmaps_to_mapstack>
    Plot Wflow static maps <examples/plot_wflow_staticmaps>
    Plot Wflow forcing data <examples/plot_wflow_forcing>
+   Plot Wflow results data <examples/plot_wflow_results>
 
diff --git a/examples/convert_staticmaps_to_gtiff.ipynb → ...ples/convert_staticmaps_to_mapstack.ipynb b/examples/convert_staticmaps_to_gtiff.ipynb → ...ples/convert_staticmaps_to_mapstack.ipynb
@@ -177,7 +177,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "# update the model staticmaps\n",
+    "# Reinitialize and update the new model staticmaps\n",
+    "mod._staticmaps = xr.Dataset()\n",
     "mod.set_staticmaps(ds_updated)"
    ]
   },
@@ -191,6 +192,122 @@
     "# write the model to the new directory\n",
     "mod.write()"
    ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7fdabc58",
+   "metadata": {},
+   "source": [
+    "### Update wflow staticmaps manually using hydroMT"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "e1567262",
+   "metadata": {},
+   "source": [
+    "The previous steps show you how you can easily save a model staticmaps to a GeoTIFF mapstacks and read it again using hydroMT functions **to_mapstack** and **open_mfraster**.\n",
+    "\n",
+    "However in order to have a fully ready-to-run wflow model, the mapstacks that we create needs to be processed a little more:\n",
+    "\n",
+    "* The LAI maps have a third *time* dimension (other than x and y coordinates)\n",
+    "* The c maps have a third soil *layer* dimension\n",
+    "\n",
+    "To update manually a wflow model that is then ready to run, we advise to use the following workflow and functions:\n",
+    "\n",
+    "* read the original model\n",
+    "* save the original model staticmaps to formatted PCRaster mapstacks using the **write_staticmaps_pcr** function (based on to_mapstack with c and LAI pre-processing)\n",
+    "* manually update the PCRaster maps (eg using QGIS)\n",
+    "* read the updated staticmaps using the **read_staticmaps_pcr** function (based on open_mfraster with c and LAI post-processing)\n",
+    "* Change the model root to write the updated model to a new directory\n",
+    "* Write the model\n",
+    "\n",
+    "NOTE: We do not read the forcing as it is probably faster to just copy the file instead of loading it into python and writing it back to netcdf.\n",
+    "\n",
+    "NOTE: The staticgeoms might be changed because of manual changes in the wflow_river, lakes, reservoir or glacier staticmaps and are therefore not read here. To change these maps we recommend using the hydromt update method to keep the staticgeoms and maps aligned."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3464a5c3",
+   "metadata": {},
+   "source": [
+    "#### Save the staticmaps as a PCRaster mapstack"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "b06f0f2b",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# read the original model\n",
+    "root = 'wflow_piave_subbasin' \n",
+    "mod = hydromt.WflowModel(root, mode='r+')\n",
+    "mod.read_staticmaps()\n",
+    "mod.read_config()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "330cfb52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# save the staticmaps to PCRaster mapstacks and update them manually where needed\n",
+    "mod.write_staticmaps_pcr()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7474fc4e",
+   "metadata": {},
+   "source": [
+    "#### Create a new wflow model based on the updated PCRaster mapstack"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "ca8c57cc",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# read the updated staticmaps\n",
+    "root = 'wflow_piave_subbasin' \n",
+    "mod = hydromt.WflowModel(root, mode='r')\n",
+    "mod.read_staticmaps_pcr()\n",
+    "mod.read_config()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "c84202b5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# change root to a new directory\n",
+    "root_updated = 'wflow_piave_subbasin_updated'\n",
+    "mod.set_root(root_updated, mode='w')\n",
+    "# re-generate the basins and rivers staticgeoms, for others (gauges, lakes, reservoirs, glaicers) use the hydromt update method\n",
+    "mod.basins\n",
+    "mod.rivers\n",
+    "print(\"Creating a new directory for the updated model\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "04df13a5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# write the model to the new directory\n",
+    "mod.write()"
+   ]
   }
  ],
  "metadata": {
@@ -209,7 +326,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.2"
+   "version": "3.9.4"
   }
  },
  "nbformat": 4,

diff --git a/examples/gauges_observed_flow.csv b/examples/gauges_observed_flow.csv
@@ -0,0 +1,10 @@
+time;Q_6349410;Q_6349400;Q_6349411
+2010-02-02T00:00:00;14.21117463;23.14968045;4.657260644
+2010-02-03T00:00:00;20.63727294;40.4367125;9.237468864
+2010-02-04T00:00:00;26.21875575;54.46918112;11.94857033
+2010-02-05T00:00:00;29.66606831;59.2240498;12.4642965
+2010-02-06T00:00:00;32.1589512;59.21861451;11.93064957
+2010-02-07T00:00:00;32.26008825;57.43010672;11.23056571
+2010-02-08T00:00:00;31.09006663;54.0491823;10.51420303
+2010-02-09T00:00:00;29.99882382;50.84542554;9.88308009
+2010-02-10T00:00:00;29.10063939;48.09354881;9.312256295