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Bootstrap #12
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…when difference in peaks over 3kb window is very large
…e all data types now
…strap variance testing
…md score calculations
…ixed value added in process atac
…ap and increased number of histogram bins in both modules for better display
…hanged differential calculation to log scale
…bootstrap Making changes in the way p-values are calculated and we get chromosome information.
…chromosome from auto-generated chromosome list using genome argument
…tion and created variable for chromosomes
…ng variance calculation
…with barcode counting and included a --chip argument to adjust variance calculations when large difference in number of calls between samples is expected
…als between nascent/atac and chip
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This looks ready to merge to master.