add pre-configure hook for GRASS that replaces paths of filtered dependencies

[TopRichard]

No description provided.

[bedroge]

Lgtm, just doing a final test locally to make sure that this works.

[bedroge]

== configuring...
== Running pre-configure hook...
== Using custom configure options for GRASS
  >> running shell command:
        /tmp/bob/easybuild/sources/generic/eb_v5.1.2/ConfigureMake/config.guess
        [started at: 2025-09-30 11:33:51]
        [working dir: /tmp/bob/easybuild/build/GRASS/8.4.0/foss-2023a/grass-8.4.0]
        [output and state saved to /tmp/eb-u_55_cgu/run-shell-cmd-output/configguess-ylneive5]
  >> command completed: exit 0, ran in < 1s
  >> running shell command:
        sed -i -e 's/-lblas/$LIBBLAS/g' -e 's/-llapack/$LIBLAPACK/g' configure && sed -i 's/LDFLAGS="-Wl,--export-dynamic"/LDFLAGS="-pthread -lm 
-Wl,--export-dynamic"/g' configure &&  ./configure 
--prefix=/home/bob/eessi/versions/2023.06/software/linux/x86_64/intel/haswell/software/GRASS/8.4.0-foss-2023a  --build=x86_64-pc-linux-gnu  
--host=x86_64-pc-linux-gnu --enable-largefile=yes --with-cairo=yes --with-cxx --with-fftw --with-fftw-libs=$EBROOTFFTW/lib 
--with-fftw-includes=$EBROOTFFTW/include --with-freetype --with-freetype-libs=$EBROOTFREETYPE/lib --with-freetype-includes=$EBROOTFREETYPE/include 
--with-geos=$EBROOTGEOS/bin/geos-config --with-lapack --with-lapack-libs=$LAPACK_LIB_DIR --with-lapack-includes=$LAPACK_INC_DIR --with-blas 
--with-blas-libs=$BLAS_LIB_DIR --with-blas-includes=$BLAS_INC_DIR --with-netcdf=$EBROOTNETCDF/bin/nc-config --without-odbc --with-opengl --with-openmp 
--without-postgres --with-proj-libs=$EBROOTPROJ/lib --with-proj-includes=$EBROOTPROJ/include --with-proj-share=$EBROOTPROJ/share/proj --with-pthread 
--with-readline --with-readline-libs=$EPREFIX/usr/lib64 --with-readline-includes=$EPREFIX/usr/include --with-sqlite --with-tiff-libs=$EBROOTLIBTIFF/lib 
--with-tiff-includes=$EBROOTLIBTIFF/include --with-x --with-zlib-libs=$EPREFIX/usr/lib64 --with-zlib-includes=$EPREFIX/usr/include --with-bzlib 
--with-bzlib-libs=$EPREFIX/usr/lib64 --with-bzlib-includes=$EPREFIX/usr/include --with-zstd --with-zstd-libs=$EBROOTZSTD/lib 
--with-zstd-includes=$EBROOTZSTD/include --with-gdal=$EBROOTGDAL/bin

...

== Build succeeded for 1 out of 1
== Summary:
   * [SUCCESS] GRASS/8.4.0-foss-2023a

[bedroge]

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.09/pr_95/93522

date	job status	comment
Sep 30 10:10:36 UTC 2025	submitted	job id 93522 awaits release by job manager
Sep 30 10:11:19 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 30 10:16:34 UTC 2025	running	job 93522 is running
Sep 30 10:20:45 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-93522.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen2-17592274170.tar.gz size: 0 MiB (21498 bytes) entries: 1 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen2/software no software packages in tarball reprod directories under 2023.06/software/linux/x86_64/amd/zen2/reprod no reprod directories in tarball other under 2023.06/software/linux/x86_64/amd/zen2 2023.06/init/easybuild/eb_hooks.py
Sep 30 10:20:45 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_amd_zen2+default P: perf: 442.041 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_amd_zen2+default P: perf: 441.598 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.84 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.79 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_amd_zen2+default P: latency: 3.95 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_amd_zen2+default P: latency: 4.2 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.58 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.54 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7329.21 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7207.32 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-93522.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case
Sep 30 10:59:09 UTC 2025	uploaded	transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-17592274170.tar.gz to S3 bucket succeeded

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.09/pr_95/93523

date	job status	comment
Sep 30 10:10:40 UTC 2025	submitted	job id 93523 awaits release by job manager
Sep 30 10:11:15 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 30 10:16:32 UTC 2025	running	job 93523 is running
Sep 30 10:17:37 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-93523.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2025.06-software-linux-x86_64-amd-zen2-17592273900.tar.gz size: 0 MiB (21501 bytes) entries: 1 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all no module files in tarball software under 2025.06/software/linux/x86_64/amd/zen2/software no software packages in tarball reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod no reprod directories in tarball other under 2025.06/software/linux/x86_64/amd/zen2 2025.06/init/easybuild/eb_hooks.py
Sep 30 10:17:37 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-93523.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case
Sep 30 10:59:17 UTC 2025	uploaded	transfer of eessi-2025.06-software-linux-x86_64-amd-zen2-17592273900.tar.gz to S3 bucket succeeded