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{2023.06}[foss/2021a] SciPy-bundle V2021.05 #298

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eessi-bot bot commented Jul 6, 2023

Instance eessi-bot-citc-aws is configured to build:

  • arch x86_64/generic for repo eessi-2021.12
  • arch x86_64/generic for repo eessi-2023.06-compat
  • arch x86_64/generic for repo eessi-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-2021.12
  • arch x86_64/intel/haswell for repo eessi-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-2021.12
  • arch x86_64/amd/zen2 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-2021.12
  • arch x86_64/amd/zen3 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-2023.06-software
  • arch aarch64/generic for repo eessi-2021.12
  • arch aarch64/generic for repo eessi-2023.06-compat
  • arch aarch64/generic for repo eessi-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-2021.12
  • arch aarch64/neoverse_n1 for repo eessi-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi-2021.12
  • arch aarch64/neoverse_v1 for repo eessi-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi-2023.06-software

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bot: build repo:eessi-2023.06-software arch:x86_64/generic

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eessi-bot bot commented Jul 6, 2023 •
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Updates by the bot instance eessi-bot-citc-aws (click for details)

  • received bot command build repo:eessi-2023.06-software arch:x86_64/generic from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic

  • handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:

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eessi-bot bot commented Jul 6, 2023 •
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New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5760

date job status comment
Jul 06 06:27:24 UTC 2023 submitted job id 5760 awaits release by job manager
Jul 06 06:28:15 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:32:22 UTC 2023 running job 5760 is running
Jul 06 06:37:33 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5760.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1688625390.tar.gzsize: 0 MiB (71856 bytes)
entries: 3
modules under 2023.06/software/linux/x86_64/generic/modules/all
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software under 2023.06/software/linux/x86_64/generic/software
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other under 2023.06/software/linux/x86_64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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bot: build repo:eessi-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-2023.06-software arch:aarch64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_n1

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eessi-bot bot commented Jul 6, 2023 •
edited
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Updates by the bot instance eessi-bot-citc-aws (click for details)

  • received bot command build repo:eessi-2023.06-software arch:x86_64/intel/haswell from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512 from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512

  • received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen3 from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi-2023.06-software arch:aarch64/generic from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1

  • received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_n1 from TopRichard

    • expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1

  • handling command build repository:eessi-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

  • handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

  • handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

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eessi-bot bot commented Jul 6, 2023 •
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New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5761

date job status comment
Jul 06 06:40:11 UTC 2023 submitted job id 5761 awaits release by job manager
Jul 06 06:40:45 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:41:55 UTC 2023 running job 5761 is running
Jul 06 06:45:17 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5761.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1688625880.tar.gzsize: 0 MiB (71894 bytes)
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other under 2023.06/software/linux/x86_64/intel/haswell
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
edited
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New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5762

date job status comment
Jul 06 06:40:18 UTC 2023 submitted job id 5762 awaits release by job manager
Jul 06 06:40:42 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:44:04 UTC 2023 running job 5762 is running
Jul 06 06:47:34 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5762.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1688626031.tar.gzsize: 0 MiB (72026 bytes)
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.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
edited
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New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5763

date job status comment
Jul 06 06:40:24 UTC 2023 submitted job id 5763 awaits release by job manager
Jul 06 06:40:40 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:44:02 UTC 2023 running job 5763 is running
Jul 06 06:47:32 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5763.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1688626037.tar.gzsize: 0 MiB (71890 bytes)
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.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
edited
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New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5764

date job status comment
Jul 06 06:40:31 UTC 2023 submitted job id 5764 awaits release by job manager
Jul 06 06:40:38 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:44:00 UTC 2023 running job 5764 is running
Jul 06 06:47:29 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5764.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1688626035.tar.gzsize: 0 MiB (71895 bytes)
entries: 3
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
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no software packages in tarball
other under 2023.06/software/linux/x86_64/amd/zen2
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
edited
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New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5765

date job status comment
Jul 06 06:40:37 UTC 2023 submitted job id 5765 awaits release by job manager
Jul 06 06:41:52 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:45:16 UTC 2023 running job 5765 is running
Jul 06 06:50:48 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5765.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1688626204.tar.gzsize: 0 MiB (71800 bytes)
entries: 3
modules under 2023.06/software/linux/aarch64/generic/modules/all
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software under 2023.06/software/linux/aarch64/generic/software
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other under 2023.06/software/linux/aarch64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
edited
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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5766

date job status comment
Jul 06 06:40:47 UTC 2023 submitted job id 5766 awaits release by job manager
Jul 06 06:41:50 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:45:14 UTC 2023 running job 5766 is running
Jul 06 06:50:46 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5766.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1688626191.tar.gzsize: 0 MiB (71856 bytes)
entries: 3
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
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software under 2023.06/software/linux/aarch64/neoverse_v1/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Jul 6, 2023 •
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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_298/5767

date job status comment
Jul 06 06:40:53 UTC 2023 submitted job id 5767 awaits release by job manager
Jul 06 06:41:48 UTC 2023 released job awaits launch by Slurm scheduler
Jul 06 06:45:11 UTC 2023 running job 5767 is running
Jul 06 06:50:44 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-5767.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1688626203.tar.gzsize: 0 MiB (71848 bytes)
entries: 3
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
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software under 2023.06/software/linux/aarch64/neoverse_n1/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/neoverse_n1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

@TopRichard TopRichard added the ready-to-deploy Mark a PR as ready to deploy label Jul 6, 2023
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boegel commented Jul 7, 2023

@TopRichard SciPy-bundle with foss/2021a is already installed in EESSI 2023.06, it was installed as a dependency for GROMACS via #288, as indicated by the passing CI tests.

I don't see the point of explicitly adding it to the easystack file?

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TopRichard commented Jul 7, 2023 •
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@boegel How can we, as builders through the bot, know if the package already exists without initiating a build(or mounting the EESSI file system layer) ?
Maybe a process which checks the missing modules of the package which is about to be build, before actually going through the build process, might help.

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boegel commented Jul 7, 2023

@TopRichard Currently you can only check what's already deployed in the EESSI pilot repository - if it's installed already there's no point in opening a PR for it?

Sort of orthogonal: maybe we need to come up with a "locking" mechanism to avoid partially overlapping simultaneous builds?

To discuss further, we should open an issue on this (and close this PR)

@TopRichard TopRichard closed this Jul 7, 2023
@TopRichard TopRichard deleted the eessi-2023.06-SciPy-bundle/2021.05-foss/2021a branch July 7, 2023 11:41
trz42 pushed a commit to trz42/software-layer that referenced this pull request Apr 5, 2024
@poksumdo
Merge pull request EESSI#298 from trz42/add_hook_for_lammps
0a7ac9b 
add hook for LAMMPS
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@TopRichard @boegel